PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.CL2J8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 468aa MW: 52945 Da PI: 7.3774 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.1e-07 | 334 | 381 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd++ ++G g+W+ I r Rt+ +++++w+++l Araip.CL2J8 334 WTLSEVIKLVDGISEYGVGRWTDIKRFSFsssSYRTPIDLRDKWRNLL 381 **************************99999*99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-11 | 324 | 385 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.971 | 326 | 385 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-7 | 330 | 383 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.80E-15 | 332 | 382 | No hit | No description |
SuperFamily | SSF46689 | 2.47E-15 | 332 | 396 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MDQDEKLRKC SNMKCQRVQV DESSVPALKD EAMEVDHFLA ENRNEHVSVD GGLDIHAAFN 60 GKDDLEMEVL DGFLDDVEID DLEGTDVFSG ACEEVFFDFE FDSKAEVLGP GPFEGSLLQN 120 STSESHSSEL SGSSVVGWVS ESTKLPIAQS ECKNNPLDDV VSYQSRGAFR NNPHQPSNED 180 CLYNISLDIP HLHQLNNDHH LAGGILYCKK ETGSIEKSQP TALKEKRFRK PTLRYIEETS 240 NSRSKETAGT KRKHSSASSC DELHIRIKAL RKIRVEKSSN GISDVTIPKL KAHRGRPKKE 300 KLDDEEAFSS DSQDECLTPK RSKKKDRRKH QRMWTLSEVI KLVDGISEYG VGRWTDIKRF 360 SFSSSSYRTP IDLRDKWRNL LRASSIQTNT IDQKEDDEND DHTLRPLPFN VACRVRELAK 420 IHPYPRQRGG SKNSRSSKLG TSTSVSQSKD SPPIGQSKRN IRRKCTYK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 319 | 327 | KRSKKKDRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.CL2J8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016184861.1 | 0.0 | uncharacterized protein LOC107626486 isoform X1 | ||||
Refseq | XP_020972424.1 | 0.0 | uncharacterized protein LOC107626486 isoform X1 | ||||
TrEMBL | A0A445E6Z4 | 0.0 | A0A445E6Z4_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445E711 | 0.0 | A0A445E711_ARAHY; Uncharacterized protein | ||||
STRING | XP_007144365.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 5e-24 | TRF-like 6 |