PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.CL2J8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 468aa    MW: 52945 Da    PI: 7.3774
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.CL2J8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-07334381448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd++ ++G g+W+ I r        Rt+ +++++w+++l
      Araip.CL2J8 334 WTLSEVIKLVDGISEYGVGRWTDIKRFSFsssSYRTPIDLRDKWRNLL 381
                      **************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-11324385IPR009057Homeodomain-like
PROSITE profilePS5129412.971326385IPR017930Myb domain
SMARTSM007172.5E-7330383IPR001005SANT/Myb domain
CDDcd116601.80E-15332382No hitNo description
SuperFamilySSF466892.47E-15332396IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDQDEKLRKC SNMKCQRVQV DESSVPALKD EAMEVDHFLA ENRNEHVSVD GGLDIHAAFN  60
GKDDLEMEVL DGFLDDVEID DLEGTDVFSG ACEEVFFDFE FDSKAEVLGP GPFEGSLLQN  120
STSESHSSEL SGSSVVGWVS ESTKLPIAQS ECKNNPLDDV VSYQSRGAFR NNPHQPSNED  180
CLYNISLDIP HLHQLNNDHH LAGGILYCKK ETGSIEKSQP TALKEKRFRK PTLRYIEETS  240
NSRSKETAGT KRKHSSASSC DELHIRIKAL RKIRVEKSSN GISDVTIPKL KAHRGRPKKE  300
KLDDEEAFSS DSQDECLTPK RSKKKDRRKH QRMWTLSEVI KLVDGISEYG VGRWTDIKRF  360
SFSSSSYRTP IDLRDKWRNL LRASSIQTNT IDQKEDDEND DHTLRPLPFN VACRVRELAK  420
IHPYPRQRGG SKNSRSSKLG TSTSVSQSKD SPPIGQSKRN IRRKCTYK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319327KRSKKKDRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.CL2J8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184861.10.0uncharacterized protein LOC107626486 isoform X1
RefseqXP_020972424.10.0uncharacterized protein LOC107626486 isoform X1
TrEMBLA0A445E6Z40.0A0A445E6Z4_ARAHY; Uncharacterized protein
TrEMBLA0A445E7110.0A0A445E711_ARAHY; Uncharacterized protein
STRINGXP_007144365.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-24TRF-like 6