PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.A7P4U | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 305aa MW: 33368.1 Da PI: 5.6128 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Araip.A7P4U 114 FSCNFCKREFSSSQALGGHQNAH 136 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.15E-6 | 111 | 141 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 112 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.572 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MAAQSSDACP SESSSISATF QGIDNNTRDN DLASEPDQAS NSNNNMERML DFVKLSNNDV 60 SSIRCSSNVK ELDFFNTGKR VMGSSSTWTN NNNVDEGKDE NTEEKERTSE PKTFSCNFCK 120 REFSSSQALG GHQNAHKQER AIAKRRQGMD TGAFGHPHFP YYPYHSFFTP SLYGSYNRTL 180 GVRVESMIHK PSYPWSAGLR FGRNHNWSTQ RILGSSSSLA LDRLSIEGLQ PNNEVGGVSG 240 IQASSSNLRK EDDNGGNGNT SQLGDSSTNN VATSLTCHAK DDQDPKPDNE PSSSESPGLD 300 LSLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.A7P4U |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020973330.1 | 0.0 | zinc finger protein 4-like | ||||
TrEMBL | A0A445ABC3 | 0.0 | A0A445ABC3_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G46860.2 | 5e-83 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 8e-25 | C2H2 family protein |