PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.9W6SR | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 633aa MW: 71567.8 Da PI: 6.54 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.5 | 9e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yLk+k++g+k++l e+i+evd+yk+ePwdLp + + +++ ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v s + Araip.9W6SR 6 LPPGFRFHPTDEELVAYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgRsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKCGYWKATGKDRKVNS-Q 101 79****************************.99***************5334455777**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLv+y+grap+g++t Wvmheyrl Araip.9W6SR 102 SRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRL 133 99****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-63 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.223 | 6 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 633 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGRSLLPGK 60 DLEWYFFSPR DRKYPNGSRT NRATKCGYWK ATGKDRKVNS QSRAVGMKKT LVYYRGRAPH 120 GSRTGWVMHE YRLHERECET NAASGLQDAY ALCRVFKKAA VIIPKVADHY AADNIMMMTT 180 DSQGTPQVFD TMPWDHHIGH NGKCPHLSQD PFLNNLPSSS SSSFPHYGAL TYSPSKVDVA 240 LECARMQHSF SMPPLEVVEE FPNVGISELN IMTRGTTSMC GGSMNNNNES DILQQILSLA 300 NANVSSHEFT NHSNHSHTLL GGNNANYAAP HHHEHDFAFN AGTSYTNHAV NDMNPMRYEI 360 QDQNLRTIEI GDLESEFKSF MEEQKTVPIE DISSFQTNIQ ENEVQAESEL HNSNKEFSEA 420 DIDNFSMGFI NDGDPNENFI DDDDNIDYSN STSFEVLEET KVSHGMFVAT RRVADTFFHQ 480 IVPSQTIKVQ LNPVTIMGNN SSMEMLKNNQ ESLFKKLMMM KSPNTLASAI VFIFALLLTL 540 CVNLKGQVEN YWASRSDDDT INVKKKCCYD ANSSMKRMKQ VAHKIIWNQQ EKSWCVGIKS 600 GRGFSVVLKK IGIFLSISLA LCTMWVNHVT ISP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-57 | 1 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-57 | 1 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-57 | 1 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-57 | 1 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-57 | 1 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-57 | 1 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-57 | 1 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-57 | 1 | 160 | 15 | 170 | NAC domain-containing protein 19 |
3ulx_A | 2e-57 | 2 | 158 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.9W6SR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151822 | 6e-46 | AC151822.29 Medicago truncatula clone mth2-32h21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193619.1 | 0.0 | NAC domain-containing protein 86-like isoform X1 | ||||
Refseq | XP_025638634.1 | 0.0 | NAC domain-containing protein 86 isoform X1 | ||||
TrEMBL | A0A444ZVT1 | 0.0 | A0A444ZVT1_ARAHY; Uncharacterized protein | ||||
STRING | XP_004503093.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4421 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-132 | NAC domain containing protein 28 |