PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.8S6C1
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Dof
Protein Properties Length: 298aa    MW: 33058 Da    PI: 8.9899
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.8S6C1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof112.81.6e-3559115561
       zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                   l+cprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ +
  Araip.8S6C1  59 PLRCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRPT 115
                  689***********************************************8777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2355113IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.50360114IPR003851Zinc finger, Dof-type
PfamPF027014.8E-3160112IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106298IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGLSSKQVSS TGLDWNKALL QSSQNLELPS KITTMKKQQQ QQQQQQQQQI QQQQPILEPL  60
RCPRCDSTNT KFCYYNNYNK SQPRHFCRAC KRHWTKGGTL RNVPVGGGRK NKRPTKKSTT  120
TTSISTTTTT TVTTLNGGGG KMEVQPQSNR PLPPPPPTLY QSMIRPPPLL PQQNNNNLSE  180
VKDFGGSGMF LSSSSSALNL PQSQSLIFPF STTSSSSFDA NPCSVSASNI YSYGGEEFKT  240
MEETTINGTN THLWEIPLPA TTTSVAMEMP SNYWGWEDLD PLVSTDLNVP WDDSDIKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.8S6C1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368295e-54BT136829.1 Medicago truncatula clone JCVI-FLMt-15B3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181807.10.0dof zinc finger protein DOF1.4
RefseqXP_025682538.10.0dof zinc finger protein DOF1.4
TrEMBLA0A4P1RLN24e-93A0A4P1RLN2_LUPAN; Uncharacterized protein
STRINGGLYMA13G31560.17e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51073356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.17e-29Dof family protein