PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.8LI6X | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | DBB | ||||||||
Protein Properties | Length: 216aa MW: 23910.5 Da PI: 5.9617 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.7 | 8.4e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ e+++fC +++ lC+ C ++H Ht Araip.8LI6X 4 QCDVCHKVEASFFCPSDEAALCHGCDRTIHCAnkvatkHT 43 7******99*********************6656676776 PP | |||||||
2 | zf-B_box | 32.1 | 2.3e-10 | 55 | 95 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 ++ C+ ++e ++ +fC++++ lC +C +++H g H Araip.8LI6X 55 APLCDICQERRAYIFCQEDRAILCSECDVSIH-GaneytkkH 95 789*****************************.445666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.755 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.16E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 8.6E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.552 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.4E-8 | 55 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.87E-8 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MKIQCDVCHK VEASFFCPSD EAALCHGCDR TIHCANKVAT KHTRFSLHHP NSKDAPLCDI 60 CQERRAYIFC QEDRAILCSE CDVSIHGANE YTKKHNRFLL TGVKLGAASS SSSSEPTSMS 120 SSRATTSSEA ANNQNNNNYY MGSDTGSVST SSISEYLIET IPGYCMEDLL DASFPPNGFC 180 KEYEQQSLFQ DRNNVHHYVS MCSFPLEAWS PSSTPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.8LI6X |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193142.1 | 1e-162 | B-box zinc finger protein 20 isoform X1 | ||||
Refseq | XP_025642390.1 | 1e-162 | B-box zinc finger protein 20 isoform X1 | ||||
Swissprot | Q9LQZ7 | 2e-58 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A445A8L3 | 1e-160 | A0A445A8L3_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G12060.1 | 4e-98 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 2e-51 | DBB family protein |