PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.8GU9K | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 162aa MW: 17725 Da PI: 7.8936 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.3 | 1.8e-45 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+ +la+++ Araip.8GU9K 13 PCAACKLLRRRCAVDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQIQLAVAQ 110 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Araip.8GU9K 111 AE 112 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.464 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-45 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKEGGRKQGS ASPCAACKLL RRRCAVDCVF APYFPADEPH KFANVHKVFG ASNVNKMLQE 60 LPEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID ALQIQLAVAQ AEAVHLRVRQ 120 TASSSYWTQP QSPTNSASPP SKPIFDIDMG LDHTSYADSM WS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-49 | 9 | 112 | 7 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-49 | 9 | 112 | 7 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.8GU9K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016198058.1 | 1e-119 | LOB domain-containing protein 4 | ||||
Refseq | XP_025646910.1 | 1e-119 | LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 1e-69 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A444ZHX3 | 1e-118 | A0A444ZHX3_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G35000.1 | 8e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-64 | LOB domain-containing protein 4 |