PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.81R1Z
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 422aa    MW: 45935.5 Da    PI: 6.4546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.81R1ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.85.9e-063153531154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Araip.81R1Z 315 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 353
                  5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.525304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-7314357No hitNo description
SuperFamilySSF474592.75E-10314361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0024315359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-8318357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAEDQFQASG NWWENPAIRN NWQPHQQQQD ESDHMMKPTR VSMDSSGGGA AGGGSSSVVF  60
HDPQKLQPPD SAAAATSSTD PNLHFMALGL SSPPIDWNQQ PSFLSMLQEE GGGGGGMGLS  120
AQQVHQWRSA ESEFKNNRGF CLEQNQFSPQ YSSGDSTVTS QQGFHHQHMD HSAVLYGSPS  180
SILQGLLGPD HHQQQANHNF SYPTSNYGLS SSSSNDFLSN SSSSPITTTN TSLHFTNNAP  240
FWNAAASDPK DVRSTTFFPN SLQPPFFTNP SFDVQSKNMS EMRDSGAVVK KSGSEPTPKR  300
PRNETTPSPL PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI KFLHEQVLST  360
PYMKSGAPIQ IQQGSGKSKE GEGPKQDLRS RGLCLVPVSS TFPMTHETTV DFWTPTFGGG  420
SR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.81R1Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029151161.10.0transcription factor bHLH123-like isoform X2
SwissprotQ8GXT31e-70BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A444Y5480.0A0A444Y548_ARAHY; Uncharacterized protein
STRINGGLYMA13G36010.31e-154(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.14e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]