PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.7G5H2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 662aa MW: 72126.5 Da PI: 6.7838 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 5.9e-13 | 486 | 527 | 4 | 50 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 hn ErrRRdriN+++ L++l+P++ K++Ka++L +A+e Araip.7G5H2 486 VHNLSERRRRDRINEKMRALQDLIPNC-----NKVDKASMLDEAIEL 527 5*************************8.....6************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 479 | 527 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-15 | 481 | 529 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.031 | 482 | 531 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.80E-12 | 485 | 526 | No hit | No description |
Pfam | PF00010 | 1.6E-10 | 486 | 527 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 488 | 538 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MMPLHELYRK AKEKLDCSKE INSTSAPDHS TAPESDFYEL VWENGQISMQ GQSSSRGRKI 60 PTCKSLTSHC PKGLQHRDVV GYGNGTNNVN MMRMGKFGDS ESGLNEIRMP APSAEDEDVI 120 HWLNYGMDES LPHDYGSDFI HELSGVTMHE IPPLNNLSLL DKRSNSNQVL RDSHKNYARH 180 AFGSEQGILN KDFSVMARGE IEIPGPKPST SQFCQPSSYQ CQGSFASVRS KASEITENNG 240 SNPAHQVPCG ELTQIFPSAS SGFSGLKLDK QDQVMCSSSS TIMNFSHFAR PAAIVKANLQ 300 NIGLSSSRSD GIENKKKDAS ATASNPPEST KAGFSGERQK QSAVHELKVV EPSKADLKQL 360 EPSKADLKQL EPKSLEVNAT VLRQSDPARK EDVSKIYQSS NLLLCESTNK GEEAVVKNME 420 PAVASSSVCS GNGAERISGN PNQSLKRKRQ ETEDSECHSE DVEEESVDVK KAGPTRGVKR 480 SRSAEVHNLS ERRRRDRINE KMRALQDLIP NCNKVDKASM LDEAIELCQW ELVPQMHRTH 540 PPAAPMPGPS ALHGMGRSNP PVFGLPSQGL PIPTMPRAPM FSYQGEPVAN SPALRPNACG 600 TAGLTETENP ASASNQKDPV PIMQNTNGCN STSQTTKQCE AAAAGRAVDA TKKDNLVTDK 660 FD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 490 | 495 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.7G5H2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015968735.2 | 0.0 | LOW QUALITY PROTEIN: transcription factor PIF3 | ||||
TrEMBL | A0A444YJC4 | 0.0 | A0A444YJC4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA20G22291.1 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5271 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 6e-36 | phytochrome interacting factor 3 |