PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.3PL7T
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 80aa    MW: 8930.84 Da    PI: 9.1915
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.3PL7TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.7e-095282347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W+ Ia++++ gRt++++k++w++ 
      Araip.3PL7T  5 RWSQIAARLP-GRTDNEIKNFWNST 28
                     4*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.572133IPR017930Myb domain
SuperFamilySSF466893.83E-8436IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-12530IPR009057Homeodomain-like
PfamPF002498.4E-7528IPR001005SANT/Myb domain
CDDcd001671.30E-6529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MSYVRWSQIA ARLPGRTDNE IKNFWNSTLK KRFKLSTNNT PSPNNNSSSD DSSSDPNNAN  60
GIIMVHLNEQ QHDLMPIGGA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.3PL7T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020963995.11e-44gelsolin-related protein of 125 kDa-like, partial
TrEMBLA0A444XYU12e-42A0A444XYU1_ARAHY; Uncharacterized protein
STRINGXP_004507092.15e-18(Cicer arietinum)
STRINGXP_002531903.15e-18(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.17e-15myb domain protein 46