PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.3KN0A
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 338aa    MW: 38011.9 Da    PI: 7.9871
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.3KN0AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.2e-36251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i+
   Araip.3KN0A  25 FLTKTYQLVDDPATDHIVSWGEDQSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Araip.3KN0A 113 RRKTA 117
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.88E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.3E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.7E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALLLDNCES ILLSLESNKS VPAPFLTKTY QLVDDPATDH IVSWGEDQST FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAHHP  120
QQITAINHHH SPIPSFFPFS SRLSISPPND SDDQANWCDS PPPTATPCYN TSSVTALSED  180
NERLRRSNTM LMSELAHMKK LYNDIIYFVQ NHVKPVPPSN TCSSSLLLCS NTPSSHSYAS  240
SGAANGNVSM LQRPMNNLLG YYSQTQNCPS NTARSSVTIV EAPPPCKTKL FGVPLQSKKR  300
VHPEYGSNNL ANSETNKARL ILEKDDLGLN LMPPSTTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-212111626131Heat shock factor protein 1
5d5v_B2e-212111626131Heat shock factor protein 1
5d5v_D2e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.3KN0A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016163251.10.0heat stress transcription factor B-4
RefseqXP_025667384.10.0heat stress transcription factor B-4
SwissprotQ9C6351e-115HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A445CBL00.0A0A445CBL0_ARAHY; Uncharacterized protein
STRINGGLYMA06G04390.11e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-106heat shock transcription factor B4