PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2Z4SA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 921aa    MW: 103301 Da    PI: 7.8879
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2Z4SAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP60.34.8e-19125172148
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                  +Cqv+gCe+d++e+k yhrrh+vC  +++a++v+++g+ +r+CqqC++
  Araip.2Z4SA 125 CCQVPGCEVDITELKGYHRRHRVCLRCANAATVMLDGEAKRYCQQCGK 172
                  6*********************************************98 PP
2SBP41.43.8e-132002284977
                  EEETTT--SS--S-STTTT-------S-- CS
          SBP  49 fhelsefDeekrsCrrrLakhnerrrkkq 77 
                  fh ls+fDe+krsCrr+L++hn+rrr+k 
  Araip.2Z4SA 200 FHVLSDFDEGKRSCRRKLERHNNRRRRKP 228
                  9************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-24120214IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.17123227IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-17124172IPR004333Transcription factor, SBP-box
PfamPF031101.3E-14126172IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.89E-10199230IPR004333Transcription factor, SBP-box
PfamPF031101.1E-6200227IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MEPLPSLPPP LNNNNMDDSS SIWDLTYLLD FNLDDLPLDP HQPSQPLDFD PPAPPDPHNI  60
PPASPLPAND KVRKRDPRLT CSNFLAGRVP CACPEIDAQL ENEGLPGKKR VRTVSAARGS  120
PPTVCCQVPG CEVDITELKG YHRRHRVCLR CANAATVMLD GEAKRYCQQC GKNSKGEFWN  180
TLLEEAIRVM ISIRNGAYGF HVLSDFDEGK RSCRRKLERH NNRRRRKPAD SRAEAAHEPL  240
PVAQNEDSTN DGETGKGLDS SNLSCEINEK EVSLDLEDEP VANLNSAPDM QNITNDSVMT  300
FLASGETQVN SGKDVSNLSN SPSYCDNKSA YSSLCQTGRI SFKLYDWNPA EFPRRLRHQI  360
FQWLASMPVE LEGYIRPGCT ILTIFIAMPK NMWINLLEDP MYYVRDLVAP GKFLSARGNA  420
LIYLNDMFFR IMKDGTSVTK VKVNMQAPRL HYVHPTYFEA GKPLEFVACG SNLMQPKFRL  480
LVSFSGKYLK CEYCVPSPHN WTGNNMSCAF ENQLYKIYVP HTEETLFGPA FIEVENESGL  540
SNFIPVLIGD KEICSEMRTL QQRLDESLHS KQFQSTSGGS ICSLCEDFAH RHTSSDLLVD  600
IAWLLKNPTS ENFERMMTAS QIQRYCYLLD FLICHDSILI LEKILPKLVI FTEGLKSNIV  660
VSQTSDVDVT QLLNCMHLAR DVINQNHQKG RGIVVHSETE GFRIEKTCTQ DSLPSVSRIK  720
SQDVLSRTDS KCGIMRSPTS NDKIDRIPLL KREIIMNMEE LPKRSSRRYV GRGFLSSRPA  780
MFVIVSVAVC LAVCVAVFHR GRGPGMLMLL LTSDGVGGSL MEASLTGPVS GGDPRLEDAY  840
SKGSWKSCNA EKAVIDASLR RGWCFGTHKC VAGISNGWMK YKRNVWKEKF LQRTVICWAS  900
QNPKRKAESM STVGMARKFK G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A3e-37126230683squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213225RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2Z4SA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122280.0KF312228.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025693742.10.0squamosa promoter-binding-like protein 7 isoform X1
TrEMBLA0A0K0KCL80.0A0A0K0KCL8_ARAHY; Squamosa promoter-binding-like protein
STRINGGLYMA13G28460.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7