PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2U2B9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 537aa    MW: 58623 Da    PI: 8.5459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2U2B9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.5e-15353398555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Araip.2U2B9 353 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 398
                  9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-18346410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-13353398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17353405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-17353402No hitNo description
SMARTSM003532.2E-18354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
TRHYITSYPI IYQSIFSFFL SPTPTTTYYL LFPLHHVRES THSCVHQFLF FLQEMSQCVP  60
SWEVEDTNPP PPRPSLRSNS NSTIPDVPML DYEVAELTWE NGQLSMHGLG FPRVPTKSSA  120
VTTTANKYTW EKPRASGTLE SIVNQATTTP QNAKSTAVHG FGGVYENLLV PWVDPHRVPA  180
TVISPGTSNT VTMDALVPCS NRVEEQRTPQ VMDSISGGLG ACMAGRTTRM GAGDAKDGGA  240
LEKRAAMVRR VPAPTVSAHE MSSRDQSVSG SATFGRESRH VTLDTCEREF GVGFTTSTSM  300
GSPENTSSAK QCTKTNTIDD HDSVCHSRSM EEKKKETGKS SVSTKRSRAA AIHNQSERKR  360
RDKINQRMKT LQKLVPNSSK TDKASMLDEV IEYLKQLQAQ VQMVNRINMS SMMLPMTMQQ  420
QLQMSMMAPM GMGMGMGMGM GMAGMGMGMD MNTLSRTNIP PGIPPVLHPS PFMPMPSWDA  480
AATATAAAAT GAADRLQGPT PSAMPDHLSS FFGCPSQVSK CSKIILYLLC KIISLEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356361ERKRRD
2357362RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2U2B9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020960687.10.0transcription factor UNE10
TrEMBLA0A444YTT70.0A0A444YTT7_ARAHY; Uncharacterized protein
STRINGXP_002511647.11e-177(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-89bHLH family protein