PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.2LX3X
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 756aa    MW: 81439.5 Da    PI: 5.2444
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.2LX3XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16488534455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Araip.2LX3X 488 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 534
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.75E-17480538No hitNo description
SuperFamilySSF474591.01E-20481545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-21481542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349484533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13488534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18490539IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MPLYELYRLS REKLDEEING TRATDQSQSS SLSVDSTFMV AFGVVASLPC DFDFSRPEKD  60
FFELIWENGN ILTTQGQSSR AKKSPPRRSL PSHCLPSHSP KGRDRDAGYV NNSRVGKSGD  120
LDTGLNEISM SVPSTEVDLG HDDDVIPWLD YTMDGSLQNE YGSNFLHELS GVTDQDLPSN  180
HFSLVDKSSG NQVFRDSHKN SAEQSNFSSV SSTGVDETTR PKASTVESYL PSSFISVRPR  240
VSGVTANDTS NAMLHPPVTE IPSSSSDFSS LKMQKQDQVI PSNGSSVMNF SHFARPAAIV  300
RANLQNIGLK SVSSSTRSEN VESMNKGAVV PSSNLPESTL ADSCSECPKV LMGNNEKAVE  360
QSRDDLKLLE SKSLEQNIAG SKQLDPTCKE KAIKIDQTSN RALGETATNT QIAVERSTEL  420
VVASSSVGSG NCADRGSDDP IQNLKRKNRD TEDSEWHSDD VEEESVGVKK AAAGRGASGS  480
KRSRAAEVHN LSERRRRDRI NEKMRALQEL IPNCNKVDKA SMLDEAIEYL KTLQLQVQMM  540
SMGAGLYMHP MMLPHGMQHM HAPHLAPFSP MAYGMQMGLG MGYGMAMPDM NGVSSRFPMV  600
QVPQMQGTHV PVAQMSGATA MVRSNTQGFG VPGQGFPLPL PRAPLFPFSG GPVMNSSSAL  660
GLRPCGATGL SQTADLASTS GLKDPSPNTD SLVKQSTGGG GCDSTSQMPT QCEAAPTVGF  720
EQSPMVHNSS HTSEANDSGT LNPDKEDNNL VTGYDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1492497ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.2LX3X
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016175381.10.0transcription factor PIF3 isoform X1
RefseqXP_025674805.10.0transcription factor PIF3 isoform X1
TrEMBLA0A1L2K2390.0A0A1L2K239_ARAHY; Phytochrome interacting factor 3
STRINGGLYMA20G22291.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-56phytochrome interacting factor 3