PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.1N7IP

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 324aa MW: 36857.4 Da PI: 8.3795

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.1N7IP	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.3	7.9e-33	54	195	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 lp+G++F+P+d e++ e+L++kv ++ ++++ ++++ +i++++P++Lp vk++ + +fF++ +k+y+tg+rk+r+++ + +W+ Araip.1N7IP 54 LPAGVKFDPNDIEIL-EHLEAKVMSHVpnlhplIDEFIpTLQDEnGICYTHPEKLP-GVKKDGQIRHFFHRPSKAYTTGTRKRRKVHtdedgsETRWH 149 799*********9.99*99986665443332233555547******.667777788**************744446555788 PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+++v++ +g ++g kk+Lv+y gr++k+ekt+Wvmh+y+l Araip.1N7IP 150 KTGKTRPVVAGGGLVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 195 ********99999******6658*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-36	49	214	IPR003441	NAC domain
PROSITE profile	PS51005	32.758	54	214	IPR003441	NAC domain
Pfam	PF02365	4.0E-14	55	195	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MAWCNDTHEK EIIASNNSTI TLRPKSDPNV TCPSCGHNIQ IIQEQGGIHE LPGLPAGVKF 60 DPNDIEILEH LEAKVMSHVP NLHPLIDEFI PTLQDENGIC YTHPEKLPGV KKDGQIRHFF 120 HRPSKAYTTG TRKRRKVHTD EDGSETRWHK TGKTRPVVAG GGLVKGFKKI LVLYTNYGRQ 180 KKPEKTNWVM HQYHLGSNEE ERDGELVVSK VFYQTQPRQC GNSIVIKEDN DDDLPYGKIL 240 MMNNSSKKHK NNNDRNVAAP VVDYYINYDH VDHHNHNHNS QRCSSPTQLI PNLVLQGDSS 300 SLFRFASSSL DGNTNKTRLF ERKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.1N7IP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016179280.1	0.0	NAC domain-containing protein 73
Refseq	XP_025684402.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-114	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A444WYI7	0.0	A0A444WYI7_ARAHY; Uncharacterized protein
STRING	GLYMA07G32250.1	1e-143	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-106	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]