PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.1FG0Z

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 467aa MW: 51268.7 Da PI: 7.4232

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.1FG0Z	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.9	4.4e-08	188	209	4	25
XCHHHCHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKk 25 k rr+++NReAAr+sR+RKk Araip.1FG0Z 188 AKTLRRLAQNREAARKSRLRKK 209 6889*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.9E-5	187	209	No hit	No description
PROSITE pattern	PS00036	0	192	207	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-28	244	318	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MGSQRIIGGG LGLSEAGPST HHHHHVPSYG VLHGINSANP STLINEGHAF NFGELEEAIV 60 LQGVKARNDE GKAPLFTTAP RPAATLEMFP SWPIRFHQTS RGGSKSGGES TDSALSTKTE 120 PPLEAESPMS KKATTPSSLD HQHHLQHDHH DASRIVGPSS SSQNQSQAKS PHEKRKGAGS 180 TSEKPLDAKT LRRLAQNREA ARKSRLRKKG LFMDCGGVGG NLSSGGAMFD MEYGRWLEEE 240 QRLMGELRNG VQAAVSEGEM RGIVDGYLSH YDELFRLKSV AAKSDVFHLI NGMWTSQAER 300 CFLWIGGFKP SDLITMLIQQ LEPLAEQQIM GMYGLRHSSQ QAEDALSQGL DQLQQSLVDT 360 IAGGPIVDGV QQMVVAMGKL ANLEGFVRQA DNLRQQTLHQ LCRLLTVRQA ARCFIVIGEY 420 YGRLRALSSL WASRPRETLM SDDNSCQTTT DLQMVHPSHH QNHFPSF

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MGSQRIIGGG LGLSEAGPST HHHHHVPSYG VLHGINSANP STLINEGHAF NFGELEEAIV  60
LQGVKARNDE GKAPLFTTAP RPAATLEMFP SWPIRFHQTS RGGSKSGGES TDSALSTKTE  120
PPLEAESPMS KKATTPSSLD HQHHLQHDHH DASRIVGPSS SSQNQSQAKS PHEKRKGAGS  180
TSEKPLDAKT LRRLAQNREA ARKSRLRKKG LFMDCGGVGG NLSSGGAMFD MEYGRWLEEE  240
QRLMGELRNG VQAAVSEGEM RGIVDGYLSH YDELFRLKSV AAKSDVFHLI NGMWTSQAER  300
CFLWIGGFKP SDLITMLIQQ LEPLAEQQIM GMYGLRHSSQ QAEDALSQGL DQLQQSLVDT  360
IAGGPIVDGV QQMVVAMGKL ANLEGFVRQA DNLRQQTLHQ LCRLLTVRQA ARCFIVIGEY  420
YGRLRALSSL WASRPRETLM SDDNSCQTTT DLQMVHPSHH QNHFPSF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.1FG0Z

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020984905.1	0.0	transcription factor TGA9 isoform X1
Refseq	XP_025614216.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	1e-180	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A445BWG6	0.0	A0A445BWG6_ARAHY; Uncharacterized protein
STRING	XP_007150072.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-163	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]