PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.0ZF73
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 358aa    MW: 39577.2 Da    PI: 8.2665
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.0ZF73genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.84.9e-41189266178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +CqvegC  dl +ak+yhr+h+vCe hsk+p+v+++gle+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+++
  Araip.0ZF73 189 CCQVEGCGLDLLSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPHP 266
                  6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.6E-34182251IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.505187264IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-38188269IPR004333Transcription factor, SBP-box
PfamPF031101.1E-31190263IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010358Biological Processleaf shaping
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MIYLQMCTLL LRIIDSKLTV EFFWIVPXEW EHLFFSNAKV TENPKLQPPP DWSGEANGET  60
NVGLLDNSGG SGCSESELMN PSSSRSSKSA SINSSSNRDS KTSIFTLESS QDDSSGKKEE  120
LVENSHSHEP PPGSGEPLLT LKLGKRLYFE DVCPGSDAKK NQSSSGAPIQ AVSSGKKSKS  180
NAQNMQYPCC QVEGCGLDLL SAKDYHRKHR VCESHSKSPK VVIAGLERRF CQQCSRFHGL  240
SEFDENKRSC RRRLSDHNAR RRKPHPETVQ LNPSDLTPSP FAVGRQQISP FTYTTSGAAT  300
ANTVWQDMRR SKQLPQTKDF LLKAVKGNNE IPSIVSMVTE DDSKGIAFAS KTLILLTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-281902631184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.0ZF73
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122230.0KF312223.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193069.20.0squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_025640139.10.0squamosa promoter-binding-like protein 10 isoform X1
RefseqXP_025640144.10.0squamosa promoter-binding-like protein 12 isoform X5
RefseqXP_025640145.10.0squamosa promoter-binding-like protein 12 isoform X5
RefseqXP_029147684.10.0squamosa promoter-binding-like protein 12 isoform X5
TrEMBLA0A445DL890.0A0A445DL89_ARAHY; Uncharacterized protein
STRINGXP_007163771.11e-132(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-53squamosa promoter binding protein-like 2