PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.8558s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Trihelix

Protein Properties

Length: 335aa MW: 39134.1 Da PI: 4.4231

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.8558s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.4	9.1e-14	91	175	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W +qe +L+e+ ++ +l+r++l+ +W ev++k+ +e +e+s +qC+ ++nl+++y+k+k +k + ss++ +f++l+ Araha.8558s0003.1.p 91 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRMEKSETQCRRMIDNLKRKYRKEKIKVEK-SGLGSSKWGFFNKLD 175 ***********************************788899*****************977776.478999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.6E-20	90	176	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MGDSEDETGY PKKFYSLNRQ NHPMYSRPIP KRHAYYNEEE DEDEVEGEEE EPQGGYIRGN 60 ERFQKRQKPN KPVVSGFEFA GPSDTKVAYD WREQEAFVLL EVWGDRFLQL GRRSLRNEDW 120 NEVAEKVSEE LRMEKSETQC RRMIDNLKRK YRKEKIKVEK SGLGSSKWGF FNKLDMLLCV 180 SPKSDLGLAC GVDSGEFVFM NTKVYLDKSN GFDEMMDSPG DSEEEEDDED EVDYERKKVN 240 DAASYKMLAD SVERFGKIYE KMEKSKKEQM KELEKMRADF QKDLELQKKQ IVDRAQSEIA 300 RLREEEENHH GGGNDDVSED EEMENDSDVN LSDE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.8558s0003.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB020746	0.0	AB020746.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOB24.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002883522.1	0.0	trihelix transcription factor ASIL2
TrEMBL	D7L537	0.0	D7L537_ARALL; Uncharacterized protein
STRING	scaffold_302996.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9779	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-176	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Araha.8558s0003.1.p