PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.59149s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 26169.9 Da PI: 4.3303 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 1.9e-10 | 135 | 182 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f L ++l + + +K +K +iL A++ +++L Araha.59149s0001.1.p 135 TKACRERMRREKLNERFMDLSSVLEPG---RTPKTDKPAILDDAIRILNQL 182 5678**********************8...8****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.551 | 131 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.57E-7 | 135 | 185 | No hit | No description |
Pfam | PF00010 | 1.0E-7 | 135 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-10 | 137 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-13 | 137 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-11 | 139 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MYPSLNDDDF VSDLFCFDQS NGAELDDYTQ FGVNLQPDQE DTFPDFVSYG VNLQQDPEEV 60 FSIGAAQLDL SSYNGVLSQE PEQVGQKDCG IVQEDEVEIN SGSSGGAVKQ EQEHLDDDCS 120 RKRARTRSCS RGGGTKACRE RMRREKLNER FMDLSSVLEP GRTPKTDKPA ILDDAIRILN 180 QLRDEAHKLE ETNQKLLEEI KSLKAEKNEL REEKLVLKAD KEKTEQQLKS M |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.59149s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088053 | 0.0 | AY088053.1 Arabidopsis thaliana clone 40736 mRNA, complete sequence. | |||
GenBank | AY102106 | 0.0 | AY102106.1 Arabidopsis thaliana AT4g14410/dl3245w mRNA, complete cds. | |||
GenBank | AY133565 | 0.0 | AY133565.1 Arabidopsis thaliana At4g14410/dl3245w mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872680.1 | 1e-165 | transcription factor bHLH104 | ||||
Refseq | XP_020872681.1 | 1e-165 | transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 1e-150 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | D7MH23 | 1e-149 | D7MH23_ARALL; Basic helix-loop-helix family protein | ||||
STRING | fgenesh2_kg.7__2895__AT4G14410.2 | 1e-149 | (Arabidopsis lyrata) | ||||
STRING | XP_010435125.1 | 1e-149 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.1 | 1e-152 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.59149s0001.1.p |