PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.5836s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 164aa MW: 17798 Da PI: 10.3822 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.5e-20 | 71 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIr+ + +g r +r++lg+f taeeAa a+++a+ +l g Araha.5836s0002.1.p 71 KKFRGVRQRP-WGKWAAEIRCGRAhGGgkGRpQRVWLGTFETAEEAALAYDNAAIQLIG 128 59********.**********77755575449**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 7.1E-35 | 1 | 160 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 8.68E-25 | 71 | 136 | No hit | No description |
Pfam | PF00847 | 4.3E-14 | 72 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-27 | 72 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-30 | 72 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-19 | 72 | 136 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.496 | 72 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 73 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MKRIVRISFT DTEATDSSSS EDESPPSRHR GKKLVKEIVI DPSDPPEVGK TRFKIRIPAR 60 YLAPKTTTNK KKFRGVRQRP WGKWAAEIRC GRAHGGGKGR PQRVWLGTFE TAEEAALAYD 120 NAAIQLIGPD APTNFRRPDV DSPVVKQDSD AGGGASAASG EDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 72 | 135 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.5836s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY087064 | 1e-150 | AY087064.1 Arabidopsis thaliana clone 31252 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020866096.1 | 1e-100 | ethylene-responsive transcription factor ERF069 | ||||
Swissprot | Q8W4I5 | 7e-79 | ERF69_ARATH; Ethylene-responsive transcription factor ERF069 | ||||
TrEMBL | D7KML6 | 3e-90 | D7KML6_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.1__2503__AT1G22985.1 | 4e-91 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4000 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22985.1 | 3e-58 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.5836s0002.1.p |
Publications ? help Back to Top | |||
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