PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.56889s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 342aa MW: 39323.5 Da PI: 5.3523 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 106.2 | 2.5e-33 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+ye+++d++ ++++sws+n++sf+v+++ ef++++Lpk+Fkh+nf+SF+RQLn+YgF+kv+ e+ weF ++ F +g+ Araha.56889s0001.1.p 14 FLTKTYEMVDDSSSDSVVSWSDNNKSFIVKNPAEFSRDLLPKFFKHKNFSSFIRQLNTYGFRKVDPEK---------WEFLNDDFVRGR 93 9****************************************************************999.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 l+++i+r+k Araha.56889s0001.1.p 94 PYLMKNIHRRKP 105 *********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.77E-33 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-57 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.4E-36 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.3E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.7E-30 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009958 | Biological Process | positive gravitropism | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0048530 | Biological Process | fruit morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MDENNGGSSS LPPFLTKTYE MVDDSSSDSV VSWSDNNKSF IVKNPAEFSR DLLPKFFKHK 60 NFSSFIRQLN TYGFRKVDPE KWEFLNDDFV RGRPYLMKNI HRRKPVHSHS LVNLQAQNPL 120 TESERRSMED QIERLKKEKE GLLAELQNQE QERKDFELQV TTLKDRLQHM EQHQKSIVAY 180 VSQVLEKPGL SLNLENHERR KRRFQENSLP PSSSHIEQVE KLESSLTFWE NLVSESCEKS 240 GLQSPSMDLD AAESSLSIGD TRPKSSKIDM NSEPPVTVTA PAPKTGVNDD FWEQCLTENP 300 GSTEQQEVQS ERRDVDNDKG NQRTFWWNSG NVNNNITEKA S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-22 | 6 | 103 | 12 | 120 | Heat shock factor protein 1 |
5d5u_B | 2e-22 | 7 | 103 | 22 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-22 | 7 | 103 | 22 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-22 | 7 | 103 | 22 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.56889s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229058 | 0.0 | AK229058.1 Arabidopsis thaliana mRNA for heat shock transcription factor, complete cds, clone: RAFL16-34-M14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871281.1 | 0.0 | heat stress transcription factor A-4c | ||||
Swissprot | Q9FK72 | 0.0 | HFA4C_ARATH; Heat stress transcription factor A-4c | ||||
TrEMBL | D7MTC4 | 0.0 | D7MTC4_ARALL; AT-HSFA4C | ||||
STRING | fgenesh2_kg.8__230__AT5G45710.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2853 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 0.0 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.56889s0001.1.p |
Publications ? help Back to Top | |||
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