PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.4687s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Dof

Protein Properties

Length: 371aa MW: 41237.1 Da PI: 7.414

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.4687s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	8.1e-40	104	164	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss Araha.4687s0002.1.p 104 PTKILPCPRCKSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS 164 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-31	101	161	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-32	106	162	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	108	162	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	110	146	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MMMESRDPAI KLFGMKIPLT AVFESSVTVE DEEEDDWSGG DDKSPDKVTL EISDKNNKNC 60 NNSHDSKPES GDKEEATSTD QIESSDSPED NQQTTADGKT LKKPTKILPC PRCKSMDTKF 120 CYYNNYNINQ PRHFCKACQR YWTAGGTMRN VPVGAGRRKN KSSSSHYRHI TISEALEAAR 180 LDPGLQANTR VLSFVVDPQM NNNNNMNGYA CIPGVPWPYT WNPAMPPPGF YPPPGYPMPF 240 YPYWTIPMLS PHQSSSPISQ KGSNPNSPTL GKHSRDEESA KKNNETERKQ RNGCVLVPKT 300 LRIDDPNEAA KSSIWTTLGI KNEGMCKAGG MFEGFDKKTK MNNNEKAENS PVLSANPAAL 360 SRSLNFHEQI *

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MMMESRDPAI KLFGMKIPLT AVFESSVTVE DEEEDDWSGG DDKSPDKVTL EISDKNNKNC  60
NNSHDSKPES GDKEEATSTD QIESSDSPED NQQTTADGKT LKKPTKILPC PRCKSMDTKF  120
CYYNNYNINQ PRHFCKACQR YWTAGGTMRN VPVGAGRRKN KSSSSHYRHI TISEALEAAR  180
LDPGLQANTR VLSFVVDPQM NNNNNMNGYA CIPGVPWPYT WNPAMPPPGF YPPPGYPMPF  240
YPYWTIPMLS PHQSSSPISQ KGSNPNSPTL GKHSRDEESA KKNNETERKQ RNGCVLVPKT  300
LRIDDPNEAA KSSIWTTLGI KNEGMCKAGG MFEGFDKKTK MNNNEKAENS PVLSANPAAL  360
SRSLNFHEQI *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.4687s0002.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084628	0.0	AY084628.1 Arabidopsis thaliana clone 113639 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018441626.1	0.0	PREDICTED: cyclic dof factor 3
Swissprot	Q8LFV3	1e-118	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	A0A397Z545	0.0	A0A397Z545_BRACM; Uncharacterized protein
STRING	Bra018141.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5441	28	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-115	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Araha.4687s0002.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]