 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Araha.4235s0018.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
GRAS |
| Protein Properties |
Length: 511aa MW: 57122.4 Da PI: 5.1089 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Araha.4235s0018.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 274.1 | 4.3e-84 | 145 | 510 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevs 88
++lL cA a+++++ +++q++L+ lselas++gd+++Rlaa+ ++AL+++l++s+s ++ lp+ + ++ +++ + + f+evs
Araha.4235s0018.1.p 145 EKLLNPCALAITASNSSRVQHYLCVLSELASSSGDANRRLAAFGLRALQHHLSSSSSVSSSFLPVFTFASAEVKMFRK---TllkFYEVS 231
6899*************************************************9777777777999999544444444...4456***** PP
GRAS 89 PilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfA 169
P++ + + +aN+aIl+ ++++ + +Hi+D+++s+G+QWp+Ll+aL++Rp ++pp +RiT+v++ +++ ++g++L fA
Araha.4235s0018.1.p 232 PWFALPNNMANSAILQILAQDplnkKDLHILDIGVSHGMQWPTLLEALSCRPeGPPPCVRITVVSDLTADipfsVGPPAYNYGSQLLGFA 321
*******************998888999************************55666*********9999999888999*********** PP
GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfl 258
++l+++++++vl +++ ++++p+E+l+V+++++lh l +s+++er e+Lk+++sl+Pk v ++e++ ++ +s +F+++f+
Araha.4235s0018.1.p 322 RSLKINLQISVL-------DKFQLIDTSPHETLIVCVQFRLHPLQ---HSIPDERGETLKALRSLRPKGVFLCENNGECsTSVDFAAGFS 401
**********96.......566889*******************8...9999999************************8899******* PP
GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347
++ley ++++ds+++++ +e+++ Er+l++ e+++v+++ g++ +e + kW er++eaGF + +++e+a + ak+llrk++ ++
Araha.4235s0018.1.p 402 KKLEYLWKFLDSTSSGF----KEENSEERKLMEGEATKVLMNTGEM----NEGKDKWYERMREAGFAAEAFGEDAIDGAKSLLRKYDnNW 483
*************9997....8888889999999***********9....9************************************777 PP
GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
+ r+e+ + + l+Wk++++ ++S W+
Araha.4235s0018.1.p 484 EIRMEDGDTYAGLMWKGEAVSFCSLWK 510
777777777788**************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0042446 | Biological Process | hormone biosynthetic process |
| GO:2000032 | Biological Process | regulation of secondary shoot formation |
| Sequence ? help Back to Top |
| Protein Sequence Length: 511 aa
Download sequence Send
to blast |
MLLEEKEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGTQTWEWD QTQDPEHGFI 60
QSYSQDRSAY VGFEATNLEV VTEAPSIDLD PPPELQQQND QSRKRSCDGV IEAQQVKKSA 120
RSKRKAIKSS EKSSKDGNKE GRWAEKLLNP CALAITASNS SRVQHYLCVL SELASSSGDA 180
NRRLAAFGLR ALQHHLSSSS SVSSSFLPVF TFASAEVKMF RKTLLKFYEV SPWFALPNNM 240
ANSAILQILA QDPLNKKDLH ILDIGVSHGM QWPTLLEALS CRPEGPPPCV RITVVSDLTA 300
DIPFSVGPPA YNYGSQLLGF ARSLKINLQI SVLDKFQLID TSPHETLIVC VQFRLHPLQH 360
SIPDERGETL KALRSLRPKG VFLCENNGEC STSVDFAAGF SKKLEYLWKF LDSTSSGFKE 420
ENSEERKLME GEATKVLMNT GEMNEGKDKW YERMREAGFA AEAFGEDAID GAKSLLRKYD 480
NNWEIRMEDG DTYAGLMWKG EAVSFCSLWK *
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC237328 | 0.0 | AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence. |
