PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3287s0013.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 332aa    MW: 38484.6 Da    PI: 8.706
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3287s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind55.31.8e-17211062100
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F + lye+++d++++++iswse+g+sf+++++ ef ++vLpky   + ++ F    +++gF+kv++e+         we++++ F +gk 
  Araha.3287s0013.1.p  21 FPTILYEMVDDPSTDSMISWSESGKSFIIWNQPEFCNNVLPKYILRNDMSIF----KTFGFRKVDSER---------WEYANDDFVRGKP 97 
                          77889********************************************999....79*******999.........************* PP

                          XXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrk 100
                          el  +i+++
  Araha.3287s0013.1.p  98 ELTAEIQKR 106
                          ******998 PP
2HSF_DNA-bind63.84.2e-201962852100
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F ++lye+++d+ ++++iswse+g+sf+v++++e+ ++vLpk+   ++f+ F+ +L+++gF+kv++++         we++++ F++gk 
  Araha.3287s0013.1.p 196 FPTRLYEMVNDPLTDSMISWSESGKSFIVWNQSELCRDVLPKFSLGKEFSNFTFKLDTFGFRKVESDQ---------WEYANDDFERGKP 276
                          8899*************************************************************999.........************* PP

                          XXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrk 100
                          el e+i+++
  Araha.3287s0013.1.p 277 ELTEEIQKR 285
                          ******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.4E-2717106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.91E-1918105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.1E-2319106IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.0E-1721106IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004153.7E-28192285IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-21192285IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-25194285IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-8196219IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-20196285IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-8234246IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-8247259IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVRDNKNPGG SSRSRRPYRS FPTILYEMVD DPSTDSMISW SESGKSFIIW NQPEFCNNVL  60
PKYILRNDMS IFKTFGFRKV DSERWEYAND DFVRGKPELT AEIQKRFMAT VPPEVFGYQQ  120
PRNINYPPVK SDENFTSAIN AQQIKSRFRY EETSIAITLE SGIIAVFYLG ILLDLKRVGM  180
VRDNNPGCSS RSYRSFPTRL YEMVNDPLTD SMISWSESGK SFIVWNQSEL CRDVLPKFSL  240
GKEFSNFTFK LDTFGFRKVE SDQWEYANDD FERGKPELTE EIQKRFLASL SPEAFVFKRS  300
AEDARVIERT RALRMAMKER ALAKNLSNLT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-1672856129Heat shock factor protein 1
5d5v_B5e-1672856129Heat shock factor protein 1
5d5v_D5e-1672856129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3287s0013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873596.25e-70heat stress transcription factor A-4a
SwissprotQ94J164e-24HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A087G6N87e-60A0A087G6N8_ARAAL; Uncharacterized protein
STRINGA0A087G6N81e-60(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.12e-51HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]