PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.27186s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 407aa    MW: 44970.5 Da    PI: 9.2687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.27186s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-0584106123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k F r  nL+ H r H
  Araha.27186s0005.1.p  84 FVCEICNKGFQRDQNLQLHRRGH 106
                           89*******************88 PP
2zf-C2H212.80.00035161183123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++C+k +  +s+ k H + +
  Araha.27186s0005.1.p 161 WKCEKCSKFYAVQSDWKAHTKIC 183
                           58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.8E-683106No hitNo description
PROSITE profilePS5015710.94984106IPR007087Zinc finger, C2H2
SMARTSM003550.01784106IPR015880Zinc finger, C2H2-like
PfamPF121716.2E-584106IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SMARTSM00355290126156IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.8E-6156181No hitNo description
SMARTSM00355180161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEMFSSHSLS YKLSSLSTEA SASSGNNTLS TIQEFSGFNN VISSVCSHTE THKTKKRRGL  60
PGNPDPDAEV IALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQKNSKEQ  120
QKKKVYVCPE TNCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT  180
KICGTRDYRC DCGTLFSRKD SFITHRAFCD ALAEESARIH STSSSSLTNP NPIFHDHHHF  240
MVNKSSSLLF TSSPLYNEPS HSTAALSTSS TAALSATALL QKATALSSTT LGGGGQTRSI  300
GHHRHLTTVN ELLGVDRVMV TSSSSSEYDQ LVVDGLTSTW QKADRLTRDF LGLTGHGMHL  360
SVRPGDMLEY AGGVAFPMSS AYDTQSHDHS FQKAYDHLGF SGPHRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35157231372Zinc finger protein JACKDAW
5b3h_F2e-35157231372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.27186s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936720.0AB493672.1 Arabidopsis thaliana At4g02670 mRNA for hypothetical protein, partial cds, clone: RAAt4g02670.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872826.10.0protein indeterminate-domain 12
SwissprotO227590.0IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLD7M3F30.0D7M3F3_ARALL; Atidd12-domain 12
STRINGfgenesh1_pg.C_scaffold_60031590.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.10.0indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]