PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.26165s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 359aa    MW: 38723.8 Da    PI: 9.5695
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.26165s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.37.1e-23245308164
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                           eke+kre+rkq+NRe+ArrsR+RK+ae+e+L  kv++L aeN++L+++l +l++e++kl+ e+e
  Araha.26165s0001.1.p 245 EKEVKREKRKQSNRESARRSRLRKQAETEQLSVKVDALVAENMTLRSKLGQLNNESEKLRLENE 308
                           89*********************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.8E-31194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.4E-12128225No hitNo description
Gene3DG3DSA:1.20.5.1701.0E-15241304No hitNo description
PfamPF001702.5E-21245307IPR004827Basic-leucine zipper domain
SMARTSM003384.9E-20245309IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.633247310IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.44E-10248304No hitNo description
CDDcd147029.95E-21250299No hitNo description
PROSITE patternPS000360252267IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGSNEEGKPT NSDKPSQAAA PEQGNVHVYH HDWAAMQAYY GPRVGIPQYY NSNVAPGHAP  60
PPYMWASPSP MMAPYGAPYP PFCPPGGVYA HPGVQMGSQP QGPVSQATPG VTTPLTMDAP  120
ANSAGNSDHG FMKKLKEFDG LAMSISNNKV PSAEHSSSEH RSSQSSENGS SNGSDGNTTG  180
GEQSRRKRRR ERSPSTGERP SSQTTPPLRG ENEKHDVTMG TPVMPTTMGF QNSAGMNGVP  240
QQWNEKEVKR EKRKQSNRES ARRSRLRKQA ETEQLSVKVD ALVAENMTLR SKLGQLNNES  300
EKLRLENEAL LDQLKAQATG KTENLISRVD KNNSVSGSKN VQHQLLNASP ITDPVAAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185189RKRRR
2261267RRSRLRK
3261268RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.26165s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0626670.0AY062667.1 Arabidopsis thaliana Unknown protein (GBF2) mRNA, complete cds.
GenBankAY0933160.0AY093316.1 Arabidopsis thaliana unknown protein (GBF2) mRNA, complete cds.
GenBankX638950.0X63895.1 A.thaliana mRNA GBF2 for G-box binding factor 2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878997.10.0G-box-binding factor 2
RefseqXP_020878998.10.0G-box-binding factor 2
SwissprotP427750.0GBF2_ARATH; G-box-binding factor 2
TrEMBLD7M4Y70.0D7M4Y7_ARALL; Predicted protein
STRINGAl_scaffold_0006_38990.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.10.0G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]