PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.22681s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 79aa MW: 9191.8 Da PI: 8.6194 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 51.3 | 1.8e-16 | 3 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd+C+FaHg Araha.22681s0001.1.p 3 KTELCNKWQETGACPYGDNCQFAHG 27 9***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.939 | 1 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-8 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-12 | 2 | 33 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-19 | 2 | 34 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-13 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-10 | 35 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-13 | 35 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.972 | 39 | 67 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.3E-5 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MMKTELCNKW QETGACPYGD NCQFAHGIGE LRPVIRHPRY KTEVCRMIVT GAMCPYGHRC 60 HFRHSLTDQE RMMMMLTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 9e-24 | 3 | 68 | 5 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.22681s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC013288 | 1e-103 | AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 1e-103 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002888548.1 | 4e-55 | zinc finger CCCH domain-containing protein 14 isoform X1 | ||||
Swissprot | Q9C9N3 | 2e-50 | C3H14_ARATH; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | D7KUE4 | 9e-54 | D7KUE4_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.2__907__AT1G66810.1 | 2e-54 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10623 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-52 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.22681s0001.1.p |