PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.20257s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 303aa    MW: 34781.2 Da    PI: 9.3734
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.20257s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-1662107147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg WT  Ed +l ++v  +G+ +W+ Ia+ m+ gRt+k+c++rw++ 
  Araha.20257s0001.1.p  62 RGHWTISEDSQLMELVSVYGPQNWNHIAENMQ-GRTGKSCRLRWFNQ 107
                           899*****************************.***********996 PP
2Myb_DNA-binding51.22.8e-16115158247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
  Araha.20257s0001.1.p 115 RAFSDEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 158
                           689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.24157108IPR017930Myb domain
SMARTSM007171.4E-1261110IPR001005SANT/Myb domain
PfamPF002493.6E-1662107IPR001005SANT/Myb domain
SuperFamilySSF466892.85E-2862155IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-2563115IPR009057Homeodomain-like
CDDcd001671.20E-1165106No hitNo description
PROSITE profilePS5129425.414109163IPR017930Myb domain
SMARTSM007171.8E-13113161IPR001005SANT/Myb domain
PfamPF002491.3E-12115158IPR001005SANT/Myb domain
CDDcd001671.13E-9116159No hitNo description
Gene3DG3DSA:1.10.10.603.1E-20116163IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDFSCFQEYP FEFHCRGTFN GFRENNAVSE GFCNKRRMQK KSDDLEKKKK KKKQSGSRVC  60
SRGHWTISED SQLMELVSVY GPQNWNHIAE NMQGRTGKSC RLRWFNQLDP RINKRAFSDE  120
EEERLLAAHR AFGNKWAMIA KLFNGRTDNA LKNHWHVLMA RKMRQQSTSY VQRFNGSAHK  180
PNTDQKIFNL SPGNVDDDED MDLKKCSWKM LKEGTTNLKA QYLQEEYCSS RMPMEGPHHP  240
YSTFPADSLA LTLHVSIQEP SSSSSSSSLS LPSSSSAQHT MVTRYFETIK PPAFIDFLGV  300
GH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-32621634105MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-32621634105C-Myb DNA-Binding Domain
1msf_C5e-32621634105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13452KRRMQKKSDDLEKKKKKKK
24652KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.20257s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727320.0AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877150.10.0transcription factor MYB57
TrEMBLD7LM740.0D7LM74_ARALL; MYB110
STRINGscaffold_500894.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.20.0myb domain protein 110