PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19903s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Dof
Protein Properties Length: 316aa    MW: 34808.8 Da    PI: 9.0269
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19903s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.2e-383796261
                zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                           +++lkcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks
  Araha.19903s0001.1.p 37 DQQNLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 96
                          57899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-372495IPR003851Zinc finger, Dof-type
PfamPF027011.2E-323995IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4324195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSSHTNLPSP KPVPKPDHRI SGTSQTKKPP SSSVAQDQQN LKCPRCNSPN TKFCYYNNYS  60
LSQPRHFCKS CRRYWTRGGA LRNVPIGGGC RKTKKSIKPN SSMNTLPSSS SSQRFFSSIM  120
EDSSKFFPPP TTMDFQLAGL SLNKMNDLQL LNNQEVLDLR PMISSGRENT PVDVGSGLSL  180
MGFGDYNNNH SPTAFTTAGA SDGNLASSIE TLSCLNQDLH WRLQQQRMAM LFGNSKEETV  240
VVERPQPILY RNLEIVNSSS PSSPMKKGDN QTEWYFGNNS DNEGVISNNA NTGGGSEWNN  300
GIQAWADLNH YNALP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19903s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266390.0AB026639.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871887.10.0dof zinc finger protein DOF5.7
SwissprotQ9LSL60.0DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLD7MTZ90.0D7MTZ9_ARALL; Dof-type zinc finger domain-containing protein
STRINGfgenesh2_kg.8__2607__AT5G65590.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.10.0Dof family protein
Publications ? help Back to Top
  1. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]