PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.19157s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 278aa    MW: 28762.7 Da    PI: 4.8465
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.19157s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05137158223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           +C++Cg+ F ++     H+r H
  Araha.19157s0009.1.p 137 VCHICGRGFGSWKAVFGHMRAH 158
                           6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTNNPEKTKV DDVEEEEREV SDEQWNDEET DTREIVLGLP ALSISSRIFV DSSSVAVVEE  60
DVEKARLNEQ AVLAAGLVLA AAEEAVMKGV NEGSGSGGKK KSRPRKSTKT DDEADGSGKK  120
QKKKSSELTH PPKGPPVCHI CGRGFGSWKA VFGHMRAHKD RNYQGFLPPP TFSAAEVVSI  180
PGRNSAFAIV TAGGGSSGGI AVGGGSSGGS SGAGRSSGGF SGSVGVGGAS GCESGKGIDL  240
NVDPIEEVKE APESGFIAKF DLNKSPPKDE EEEDKTK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.19157s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0311351e-167AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBankAL1615871e-167AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026871e-167CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867063.11e-117uncharacterized protein LOC9305148
TrEMBLD7MCE81e-116D7MCE8_ARALL; Uncharacterized protein
STRINGscaffold_700556.11e-117(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.11e-57C2H2 family protein