PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1865s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | SRS | ||||||||
Protein Properties | Length: 218aa MW: 24247.6 Da PI: 6.8435 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 193.4 | 7.7e-60 | 61 | 202 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 rs t+sCqdCGnqakk+C+h RCRtCCks+g++C thv+stW+p+akrrerqqq +++ s+++ ++ + re ++ ++l+s+ Araha.1865s0005.1.p 61 RSLTISCQDCGNQAKKGCTHGRCRTCCKSHGLHCPTHVRSTWIPIAKRRERQQQIQTPISNRNG--GGDRVGNYREI--NQPATLDSSG- 145 57789**************************************************999877755..66777777765..5666665555. PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e++ +++P+evss+a+frcvr+s+ ddge ++aYqt+v i+Gh+fkGiLy+qG+e+ Araha.1865s0005.1.p 146 ------LEMDETTFPDEVSSDALFRCVRMSGTDDGEGQYAYQTTVGIAGHLFKGILYNQGPEN 202 ......4566677************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.2E-57 | 64 | 201 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.3E-26 | 66 | 108 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.5E-29 | 153 | 200 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAGIGSSRNN EEDNQQNTNW VWYRNASNNP STSHNNQIWQ QPSLDLYPGQ IDVCDLTTSS 60 RSLTISCQDC GNQAKKGCTH GRCRTCCKSH GLHCPTHVRS TWIPIAKRRE RQQQIQTPIS 120 NRNGGGDRVG NYREINQPAT LDSSGLEMDE TTFPDEVSSD ALFRCVRMSG TDDGEGQYAY 180 QTTVGIAGHL FKGILYNQGP ENMSMPTTHF YENPPRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1865s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007212 | 1e-163 | AC007212.7 Arabidopsis thaliana chromosome 2 clone F8D23 map PhyB, complete sequence. | |||
GenBank | CP002685 | 1e-163 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179404.1 | 1e-144 | SHI-related sequence 4 | ||||
Swissprot | Q9SI19 | 1e-145 | SRS4_ARATH; Protein SHI RELATED SEQUENCE 4 | ||||
TrEMBL | A0A178VVS9 | 1e-143 | A0A178VVS9_ARATH; SRS4 | ||||
STRING | AT2G18120.1 | 1e-143 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15117 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18120.1 | 1e-147 | SHI-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Araha.1865s0005.1.p |