PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.18319s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28992.9 Da PI: 9.4327 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.6 | 1.4e-22 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +n+sn qvtfskRr g++KKA+EL++LC+ae+++i+fs+ gk++ + Araha.18319s0011.1.p 15 KMKNESNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGGKVFSF 62 679******************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-34 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.133 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-28 | 7 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.52E-38 | 7 | 81 | No hit | No description |
PRINTS | PR00404 | 8.6E-20 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.3E-24 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-20 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-20 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MVRSTKGRQK IEMKKMKNES NLQVTFSKRR FGLFKKASEL CTLCGAEILM IVFSPGGKVF 60 SFGHPSVHDL IHRFENPNYN SIIVHQQNNN LQLVETRPDR NIQYLNDILT EVLATQEKEK 120 NKRMVLDIMK ESREQRGNWY EKDVKDLDMN ETNHLISALQ DVKKKLVSVM SQQYSQVNVS 180 QNYFGQSSGF IGGPNVDVGI DLFDQRRNTF NYNPNMAVFP NHTPMFGYNN DGVIVPISNM 240 NYMSSYNFNQ S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 2e-14 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-14 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-14 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-14 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-14 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-14 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-14 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-14 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-14 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-14 | 7 | 96 | 1 | 86 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.18319s0011.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY141234 | 0.0 | AY141234.1 Arabidopsis thaliana MADS-box protein AGL40 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020875559.1 | 1e-166 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-68 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | D7MBG3 | 1e-155 | D7MBG3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_7000337 | 1e-156 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14294 | 10 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36590.1 | 1e-133 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.18319s0011.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|