PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17470s0012.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 278aa    MW: 31746.1 Da    PI: 7.4936
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17470s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-151151343
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                          i n+  r +t+ kR++ + KKA+E S+LC+++ ++i+++++
  Araha.17470s0012.1.p 11 IMNEKTRITTYKKRKACLYKKASEFSTLCGVDTCLIVYGPS 51
                          88999**********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.404161IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-14160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-192100IPR002100Transcription factor, MADS-box
CDDcd002661.03E-27281No hitNo description
PRINTSPR004041.4E-6323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-161051IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRKMVKMVK IMNEKTRITT YKKRKACLYK KASEFSTLCG VDTCLIVYGP SRAGDEMVAE  60
PELWPKDESK VREIITKYRD TVSSNCTKTY TVQECLEKNN TKEEKPKIAM KYPTWDKKLD  120
KCSLNDLYAA FMAVENKIQE ATNRNQTFPD TTCWSNDQLG LCGYNQQCFE QYQLFPLPTM  180
EHNGFSFFPC NNQMTSNTAE VASFSNVTEP MIANGQNLFY GSCSDGSYGP VVQRTAYMEP  240
IQWGLGNTMF NNVKQFQDYP FRFAQGNDLE DSSKLPM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17470s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0090500.0AB009050.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDF20.
GenBankAY1412140.0AY141214.1 Arabidopsis thaliana MADS-box protein AGL47 mRNA, complete cds.
GenBankBT0260420.0BT026042.1 Arabidopsis thaliana At5g55690 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879548.10.0agamous-like MADS-box protein AGL82
TrEMBLD7MKK30.0D7MKK3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80015960.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.10.0M-type_MADS family protein