PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.17172s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BES1
Protein Properties Length: 682aa    MW: 76236.4 Da    PI: 5.7613
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.17172s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822162.92e-50772261145
                DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasas 89 
                           gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+     ++++ ++s
  Araha.17172s0006.1.p  77 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----NVVQFPTRS 161
                           6899***********************************************************************9....899999999 PP

                DUF822  90 pesslq.sslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlsl 145
                           +es+l+ s+lk++a+a+   +++++++ ++ +sp+slds+ +a++        +  +p+ sv +l
  Araha.17172s0006.1.p 162 IESPLSsSTLKNCAKAALECQQHSVLRIDENLSPVSLDSVVIAESdhpgngryTGASPIASVGCL 226
                           999999899*********************************98877777776666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.5E-4878224IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.41E-159245679IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.8E-167248678IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.2E-81254642IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52284298IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52305323IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52327348IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52420442IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52493512IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52527543IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52544555IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52562585IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52600622IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MHTLNTTTGS QDPNLDPIPD PDQFPNRNRN NPQSRRPRGF AAAAAAASIA PTENDVNNGN  60
IAGIGGGEGS SSGGGGGGKG KREREKEKER TKLRERHRRA ITSRMLAGLR QYGNFPLPAR  120
ADMNDVIAAL AREAGWSVDA DGTTYRQSHQ PNNVVQFPTR SIESPLSSST LKNCAKAALE  180
CQQHSVLRID ENLSPVSLDS VVIAESDHPG NGRYTGASPI ASVGCLEANQ LIQDVHSAEQ  240
RNDFTESFYV PVYAMLPVGI IDSFGQLVDP EGVRQELSYM KSLNVDGVVI DCWWGIVEGW  300
NPQKYVWSGY RELFNIIRDF KLKLQVVMAF HEYGGNASGN VMISLPQWVL EVGKDNPDIF  360
FTDHEGRRSF ECLNWSIDKE RVLHGRTGIE VYFDFMRSFR SEFDDFFVEG LIAAVEIGLG  420
ASGELKYPSF PERMGWIYPG IGEFQCYDKY SQSNLQKEAK SRGFAFWGKG PENAGQYNSQ  480
PHETGFFQER GEYDSYYGRF FLNWYSQLLI GHAENVLSLA NLAFEETKII VKIPAIYWSY  540
KTASHAAELT AGYYNPSNRD GYSLVFETLK KYSVTAKFVC PGPQMSLNAH EEALADPEGL  600
SWQVINAAWD KGLLIGGENM ITCFDREGCM RLIDIAKPRN HPDSYHFSFF TYRQPSPLVQ  660
GSTCFPDLDY FVKRMHGDIQ R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11724967811444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.17172s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865252.10.0beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLD7MUR10.0D7MUR1_ARALL; Beta-amylase
STRINGfgenesh1_pg.C_scaffold_80002710.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]