PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.15647s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | BES1 | ||||||||
Protein Properties | Length: 172aa MW: 18706.9 Da PI: 10.3818 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 202.5 | 1.3e-62 | 13 | 149 | 1 | 145 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasas 89 +++gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGwvv++DGttyr gs+p+ + + Araha.15647s0004.1.p 13 AATGRMPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWVVHEDGTTYRMGSRPT---------EATP 92 579*************************************************************************.........5667 PP DUF822 90 pesslqsslkssalaspvesysaspksssfpspssldsislasa.asllpvlsvlsl 145 +ss+q+s++ssa++sp++sy+asp+sss+psp+++d+i+++ + ++++ +l++l++ Araha.15647s0004.1.p 93 LCSSIQLSPQSSAFQSPIPSYQASPSSSSYPSPTRFDHIPNRFDpNQSSTYLQNLAS 149 899999999999***************************986444777777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 3.1E-57 | 15 | 135 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MTASGGGEGG STAATGRMPT WKERENNKRR ERRRRAIAAK IFTGLRSQGN YKLPKHCDNN 60 EVLKALCLEA GWVVHEDGTT YRMGSRPTEA TPLCSSIQLS PQSSAFQSPI PSYQASPSSS 120 SYPSPTRFDH IPNRFDPNQS STYLQNLASS GNLAPLRISN SAPVTPPISS PR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 5e-26 | 17 | 87 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 5e-26 | 17 | 87 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 5e-26 | 17 | 87 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 5e-26 | 17 | 87 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.15647s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002452 | 1e-160 | BT002452.1 Arabidopsis thaliana putative protein (At3g50750) mRNA, complete cds. | |||
GenBank | BT006310 | 1e-160 | BT006310.1 Arabidopsis thaliana At3g50750 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882382.1 | 6e-86 | BES1/BZR1 homolog protein 1 | ||||
Swissprot | Q9S7F3 | 1e-76 | BEH1_ARATH; BES1/BZR1 homolog protein 1 | ||||
TrEMBL | D7LTI1 | 1e-84 | D7LTI1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.5__1413__AT3G50750.1 | 2e-85 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14467 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50750.1 | 6e-62 | BES1/BZR1 homolog 1 |
Link Out ? help Back to Top | |
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Phytozome | Araha.15647s0004.1.p |