PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1373s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 135aa MW: 15364.3 Da PI: 4.9602 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.9 | 1e-19 | 11 | 98 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f v+ + +s+ + +p+++ ++ + +kt++l+ g+sW+v + + k++++++++GW +Fv +n+Lk+g+ ++F +dg+ +++ Araha.1373s0012.1.p 11 FNVF--LSQYNSNSFLIPRSYYDHLP--RPLPKTVILMGNGGKSWKVAM--KSKREQVYFEQGWANFVAENELKDGEALTFVFDGH--RRYE 94 5666..344455668*******5444..56999****************..99*****************************9874..4446 PP EEEE CS B3 94 vkvf 97 v+++ Araha.1373s0012.1.p 95 VSIY 98 6554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.7E-21 | 5 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-21 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.45E-16 | 8 | 98 | No hit | No description |
PROSITE profile | PS50863 | 14.508 | 8 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-17 | 10 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-16 | 10 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MASSDVLPRF FNVFLSQYNS NSFLIPRSYY DHLPRPLPKT VILMGNGGKS WKVAMKSKRE 60 QVYFEQGWAN FVAENELKDG EALTFVFDGH RRYEVSIYTR GSCKETRAAI EVEEISDETE 120 SDYSCDSLVS VIQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-20 | 9 | 103 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1373s0012.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873693.1 | 4e-89 | B3 domain-containing protein At3g06220 | ||||
Swissprot | Q1PES7 | 3e-66 | Y3622_ARATH; B3 domain-containing protein At3g06220 | ||||
TrEMBL | D7M6N4 | 8e-88 | D7M6N4_ARALL; Uncharacterized protein | ||||
STRING | scaffold_601507.1 | 1e-88 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06220.1 | 1e-68 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.1373s0012.1.p |
Publications ? help Back to Top | |||
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