PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.1350s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 102aa MW: 11755.5 Da PI: 9.979 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.3 | 4.9e-12 | 8 | 96 | 2 | 89 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +k+l+ sd + ++ l+lpk+++e++ ++++++++ + d ++s+ v+l r ++++ ++++GWk+ +a Lk+gD++ ++ ++ + Araha.1350s0002.1.p 8 VKKLKDSDLSYNNALYLPKDYVENIvrstgVPIPRNGIQVEILDN-NNSYWVNL--RENQKGPYIGNGWKNIKDARSLKTGDVIKLYWKD-T 95 6999******************999*9988455678888999995.566669**..99999************************99543.4 PP E CS B3 89 e 89 + Araha.1350s0002.1.p 96 K 96 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-12 | 2 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-15 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.96E-13 | 6 | 100 | No hit | No description |
SMART | SM01019 | 4.1E-8 | 7 | 101 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.502 | 7 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-9 | 8 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MNPNMMLVKK LKDSDLSYNN ALYLPKDYVE NIVRSTGVPI PRNGIQVEIL DNNNSYWVNL 60 RENQKGPYIG NGWKNIKDAR SLKTGDVIKL YWKDTKFIFS M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.1350s0002.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002886734.1 | 2e-67 | B3 domain-containing protein At1g08985 | ||||
Swissprot | Q8GWU1 | 4e-50 | Y1898_ARATH; B3 domain-containing protein At1g08985 | ||||
TrEMBL | D7KYM6 | 5e-66 | D7KYM6_ARALL; Uncharacterized protein | ||||
STRING | scaffold_200822.1 | 9e-67 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14170 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 2e-52 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.1350s0002.1.p |