PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.11737s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 130aa MW: 14028.7 Da PI: 8.1083 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.8 | 1.8e-13 | 29 | 53 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++++tG+Ck+G++C+F+H+ Araha.11737s0020.1.p 29 GQSECDYYMKTGECKFGEKCRFHHP 53 7899********************8 PP | |||||||
2 | zf-CCCH | 44 | 3.6e-14 | 85 | 107 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCkyG++CkF H+p Araha.11737s0020.1.p 85 NCPYYMKTGTCKYGATCKFDHPP 107 6********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.44E-7 | 27 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.075 | 27 | 55 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.2E-6 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-11 | 29 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-6 | 33 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 80 | 108 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-6 | 80 | 107 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-11 | 85 | 107 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 85 | 107 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-6 | 86 | 105 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MVTPATSFYQ TLTQPTLGAL SATYPQRPGQ SECDYYMKTG ECKFGEKCRF HHPADRLSAT 60 SNQASQQPNV KLSLAGYPRR EGALNCPYYM KTGTCKYGAT CKFDHPPPGE VMAKTTSEAD 120 AAGATDTTQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.11737s0020.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229145 | 0.0 | AK229145.1 Arabidopsis thaliana mRNA for floral homeotic protein HUA1, partial cds, clone: RAFL16-42-O16. | |||
GenBank | AY024357 | 0.0 | AY024357.1 Arabidopsis thaliana floral homeotic protein HUA1 (HUA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884918.1 | 8e-87 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Refseq | XP_020886407.1 | 8e-87 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Swissprot | Q941Q3 | 2e-81 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | D7L0J2 | 2e-85 | D7L0J2_ARALL; Enhancer of ag-4 1 | ||||
STRING | fgenesh2_kg.3__1328__AT3G12680.1 | 3e-86 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9761 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-83 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Araha.11737s0020.1.p |