PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.11516s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 376aa    MW: 41570.4 Da    PI: 7.0498
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.11516s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08287327954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r+RR+ri +++  L++l+P       +K++ a++L +A +Y+k L
  Araha.11516s0001.1.p 287 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 327
                           69******************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-13283343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-10284332No hitNo description
Gene3DG3DSA:4.10.280.103.9E-12286341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-6287327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEGLESVYAQ AMYGMTRESK IMEHHQGSDL IWGGNELMAR DLCSSSSYHH QLINPNLSSC  60
FMSDLGVIGE IQQQQQHVGN RASSIDPSSL DCLLSATSNS NNTSTEDDEG ISVLFSDCQT  120
LWSFGGVSSA ESENREVTNE TTTTVKPKSL KRNRGGDGGT TTETTTTTTK PKYVKRNRGD  180
ETGSHFSLLH PQDDSEKGGF KLIYDENQSK SKKPRTEKER GGSSNISFQH STCLSDNVEP  240
DAEAIAQMKE MIYRAAAFRP VNFGLEIVEK PKRKNVKIST DPQTVAARQR RERISEKIRV  300
LQTLVPGGTK MDTASMLDEA ANYLKFLRAQ VKALENLRPK LDQTNLSFSS APSFPLFHPS  360
FLPLQNPNQI RHPGC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287292RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.11516s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886170.0AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
GenBankAP0013050.0AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBankBT0203640.0BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889299.10.0transcription factor bHLH87
SwissprotQ8S3D20.0BH087_ARATH; Transcription factor bHLH87
TrEMBLD7L0R60.0D7L0R6_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.3__2354__AT3G21330.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]