PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.0122s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Trihelix

Protein Properties

Length: 479aa MW: 55135.4 Da PI: 7.7867

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.0122s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.9	7.9e-30	88	174	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Araha.0122s0004.1.p 88 RWPRQETLMLLEVRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKAGR-RQDGKNYRFFRQLEA 174 8***********************************999*************************98.77888******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.5E-4	85	148	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.097	87	146	IPR017877	Myb-like domain
Pfam	PF13837	8.9E-20	88	175	No hit	No description
CDD	cd12203	2.57E-18	88	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010197	Biological Process	polar nucleus fusion

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MEDHHHQNHP QYGIAQPSPH FSSDLFGFNL VSAPDQHHRL HFTDHEISFL PRGIQGLTVA 60 GNNSNTIVAN TSGVGGFSGF TDGGGTGRWP RQETLMLLEV RSRLDHKFKE ANQKGPLWDE 120 VSRIMSEEHG YTRSGKKCRE KFENLYKYYK KTKEGKAGRR QDGKNYRFFR QLEAIYGESK 180 DSVSCYNNSQ FIMTNALHSF QASNIHNIVP HQNKPLMTNT QSQSLSISNN FNSSSELDLT 240 SSSEGNESTR REEMNWKEKI KEFIGVHMER LIEKQDFWLE KLVKTVEDKE HQRMLREEEW 300 KRIEAARIDK ERLFWTKERE RMEARDVAVI EALQYLTGKA LIRPDSSSPI ERINGSGSGQ 360 MMAANEYADE ENKSQMEKKQ MNNKKRKEKW SNHGGNHPRI KETMMVYNNQ EIRTNDCCKD 420 DEQGHHEGYS PSNSKDGNPR RIIAMAASTK CFPLLGGDGD QNLWEGYGLK LQKEDSHQ*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MEDHHHQNHP QYGIAQPSPH FSSDLFGFNL VSAPDQHHRL HFTDHEISFL PRGIQGLTVA  60
GNNSNTIVAN TSGVGGFSGF TDGGGTGRWP RQETLMLLEV RSRLDHKFKE ANQKGPLWDE  120
VSRIMSEEHG YTRSGKKCRE KFENLYKYYK KTKEGKAGRR QDGKNYRFFR QLEAIYGESK  180
DSVSCYNNSQ FIMTNALHSF QASNIHNIVP HQNKPLMTNT QSQSLSISNN FNSSSELDLT  240
SSSEGNESTR REEMNWKEKI KEFIGVHMER LIEKQDFWLE KLVKTVEDKE HQRMLREEEW  300
KRIEAARIDK ERLFWTKERE RMEARDVAVI EALQYLTGKA LIRPDSSSPI ERINGSGSGQ  360
MMAANEYADE ENKSQMEKKQ MNNKKRKEKW SNHGGNHPRI KETMMVYNNQ EIRTNDCCKD  420
DEQGHHEGYS PSNSKDGNPR RIIAMAASTK CFPLLGGDGD QNLWEGYGLK LQKEDSHQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.0122s0004.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630487	0.0	AJ630487.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g10000.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002882649.1	0.0	trihelix transcription factor PTL
Swissprot	Q9LZS0	1e-136	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	D7L8F3	0.0	D7L8F3_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_3000901	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Araha.0122s0004.1.p

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]