PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.YV6SQ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 566aa MW: 63716.6 Da PI: 5.1848 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.5e-08 | 461 | 508 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 WT++++++++d+vk ++ W+ I + ++ ++++++++s+++++ Aradu.YV6SQ 461 LWTEDDEKKFKDVVKSNPPSlekcFWDQIFKSFP-TKSREDLVSYYFNV 508 5*****************88**************.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51011 | 17.89 | 1 | 65 | IPR001606 | ARID DNA-binding domain |
Gene3D | G3DSA:1.10.150.60 | 3.1E-13 | 2 | 71 | IPR001606 | ARID DNA-binding domain |
SMART | SM00501 | 8.4E-5 | 2 | 66 | IPR001606 | ARID DNA-binding domain |
SuperFamily | SSF46774 | 3.4E-15 | 3 | 73 | IPR001606 | ARID DNA-binding domain |
Pfam | PF01388 | 3.3E-8 | 4 | 60 | IPR001606 | ARID DNA-binding domain |
SMART | SM01189 | 8.1E-5 | 363 | 413 | IPR000949 | ELM2 domain |
SMART | SM00717 | 2.7E-4 | 458 | 511 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-6 | 461 | 508 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.31E-5 | 462 | 509 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016575 | Biological Process | histone deacetylation | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0000118 | Cellular Component | histone deacetylase complex | ||||
GO:0048555 | Cellular Component | generative cell nucleus | ||||
GO:0048556 | Cellular Component | microsporocyte nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MMCSGEPLDL YKLFMVVKEK GGYDAVCKNM LWDLVAEEYG LGLNVGSSIE LVYSKHLSTL 60 ETWLKNVADS KFPECGLMDD RVSFGKKLME VQADFLLDVY SEEGAGDKIK TVCDFADGRK 120 LCGTNRVRGL NPELSGAKKI VDLNALDHKI NGPSIGSFCS NNFSNNSSDI QNHLNEIKTS 180 TVDISDEANI MPTLSEEGDS CDKNDGHDDD DDDDDDVMVL DPSTVNKESF GRKRKRESMS 240 EMLSWLTGIA KNPCDPAVGS MPEKSKWKSY GSEEIWKQVL LFRQATYFSS DHVSWQSQKM 300 HPCMYDDQVG ANYNLRERLK SDKNLTCGVS SNMGGIQGGS ERNPSPHSEV EKLLLDQCSM 360 VPIPVGPSHQ AEVPEWTGVA IESDSKWLGS QIWPSAEIKS KVIERDPIGA GRKDSCGCEV 420 QGSVECVRFH IAQKRAKVKL ELGVAFYLWN LHKTGEDVRR LWTEDDEKKF KDVVKSNPPS 480 LEKCFWDQIF KSFPTKSRED LVSYYFNVFI LQRRGYQNRN TPDDIDSDDD ESEYGPLKNA 540 FGHQTHRSRN ITLLSPKKPK KTEHSK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.YV6SQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015961917.1 | 0.0 | AT-rich interactive domain-containing protein 1 isoform X1 | ||||
Refseq | XP_015961918.1 | 0.0 | AT-rich interactive domain-containing protein 1 isoform X1 | ||||
Refseq | XP_020996603.1 | 0.0 | AT-rich interactive domain-containing protein 1 isoform X1 | ||||
Refseq | XP_020996604.1 | 0.0 | AT-rich interactive domain-containing protein 1 isoform X1 | ||||
Refseq | XP_025696236.1 | 0.0 | AT-rich interactive domain-containing protein 1 isoform X1 | ||||
Refseq | XP_025696237.1 | 0.0 | AT-rich interactive domain-containing protein 1 isoform X1 | ||||
Refseq | XP_025696238.1 | 0.0 | AT-rich interactive domain-containing protein 1 isoform X1 | ||||
Refseq | XP_029153814.1 | 0.0 | AT-rich interactive domain-containing protein 1 isoform X1 | ||||
TrEMBL | A0A445DD20 | 0.0 | A0A445DD20_ARAHY; Uncharacterized protein | ||||
STRING | XP_004492764.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4373 | 17 | 24 |