PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Y7NUP

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 330aa MW: 37404.4 Da PI: 6.4221

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Y7NUP	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.7	3e-29	17	69	1	53
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 kprl+WtpeLH+rF+ea++qLGGsekAtPk+++++m+++gLtl+h+kSHLQ + Aradu.Y7NUP 17 KPRLKWTPELHQRFIEAINQLGGSEKATPKSLMRVMGIPGLTLYHLKSHLQAF 69 79*************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-26	15	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-14	16	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-20	17	69	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-7	19	67	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-22	151	198	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MENVQSSMHL ILSTDAKPRL KWTPELHQRF IEAINQLGGS EKATPKSLMR VMGIPGLTLY 60 HLKSHLQAFP FLLLAFTHSK YHGLLFFFFT NIFSVFFWSL QKYRLGKSQP QLEICSGNNK 120 HEDCREMKNS EGPCSSREES IGTQNEMTES MQIAEALQMQ MEVQKKLYEQ IEVQRHLQLK 180 IEAQGKYLQS VLHKAQETLA GMINNGSPGS PPISELTETR GGFSWSCGQR KQNRGTMCSL 240 EIESSLTSSE SSMDQRPNST NTTNTASLEL LPLFKESKEQ EDESIIGRKR SSSCCVDQPS 300 KMSRSELVSD IIDLNSEQID LNCSSSFWEQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Y7NUP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT137363	1e-57	BT137363.1 Medicago truncatula clone JCVI-FLMt-17O6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015956918.1	0.0	myb family transcription factor PHL8 isoform X1
Refseq	XP_025690777.1	0.0	myb family transcription factor PHL8 isoform X1
TrEMBL	A0A444ZV05	0.0	A0A444ZV05_ARAHY; Uncharacterized protein
STRING	XP_007158649.1	1e-102	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	2e-65	G2-like family protein