PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.XQ4VP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 167aa    MW: 19506.1 Da    PI: 8.8652
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.XQ4VPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.31.1e-4761361128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                  lppGfrFhPtdeelv++yLk+k++g+++el ++i+e++ + ++ +++        + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v 
  Aradu.XQ4VP   6 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEMNDCISKSRTFCLfleksFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVS 102
                  79****************************.99****866666666642233334455888************************************* PP

          NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  s +++ +g+kktLv+y+grap+g +tdWvmheyrl
  Aradu.XQ4VP 103 S-QSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 136
                  9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-514145IPR003441NAC domain
PROSITE profilePS5100548.2426158IPR003441NAC domain
PfamPF023651.8E-307136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSPVGLPPGF RFHPTDEELV NYYLKRKING QEIELDIIPE MNDCISKSRT FCLFLEKSFL  60
PSRDPEWYFF GPRDRKYPNG FRTNRATRAG YWKSTGKDRR VSSQSRPIGM KKTLVYYRGR  120
APQGIRTDWV MHEYRLDDKD SEDTTGLQKN GICTDVEEQG IVVTCLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-44413613140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.XQ4VP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967009.24e-98NAC domain-containing protein 86
RefseqXP_025655479.14e-98NAC domain-containing protein 86
SwissprotQ9FFI51e-66NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A444Z1T99e-97A0A444Z1T9_ARAHY; Uncharacterized protein
TrEMBLA0A445D1118e-97A0A445D111_ARAHY; Uncharacterized protein
STRINGGLYMA09G29760.21e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95643343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.16e-92NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]