PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.X23JQ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 25240.7 Da PI: 5.7281 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 85.7 | 6.5e-27 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+ +C++ p++ p++q++++ +++k++G++ +l+ll+a +++ r+++++sl+yeA+ r+ +Pv G++g++++++++l+++++e Aradu.X23JQ 4 SCNGCRVLRKGCNLECPIKPCLnwiksPESQSNATLFLAKFYGRAGLLNLLTAGDPKIRPAIFKSLLYEACGRIVNPVFGSTGLLSTGSWHLCEAAVE 101 6************************************************************************************************9 PP DUF260 94 lallke 99 ++l ++ Aradu.X23JQ 102 AVLSGA 107 988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.727 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-22 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCNLECP IKPCLNWIKS PESQSNATLF LAKFYGRAGL LNLLTAGDPK 60 IRPAIFKSLL YEACGRIVNP VFGSTGLLST GSWHLCEAAV EAVLSGAPIR QQDASDGGGQ 120 LLNPSDIRHV VKRGKSCSSD HVLKPRKSQF KRRAEKSKPE PEVELDQGVA ELVVEACVVN 180 ELDDSASPDS GSGLSEHVSV VVGGGAEADS GSIESVNPAR ADDGELELEL TLGCQWL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.X23JQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015966681.1 | 1e-172 | LOB domain-containing protein 41 | ||||
TrEMBL | A0A445D2Q9 | 1e-169 | A0A445D2Q9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G10180.1 | 6e-82 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-61 | LOB domain-containing protein 41 |