PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.WF2VJ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 152aa MW: 16827.1 Da PI: 10.3386 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.7 | 4.3e-32 | 86 | 144 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+k Aradu.WF2VJ 86 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHPK 144 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 7.0E-17 | 42 | 82 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-34 | 72 | 144 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 79 | 145 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-28 | 82 | 144 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-38 | 84 | 144 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-28 | 86 | 143 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MSSTRSFISS LSIDGSVANM EGSAFHLIGA ARSSDQNSQQ HKRKCSARGD EASGGKCHCS 60 KKRKHRVKRS IKVPAISNKL ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSMRGCPARK 120 HVERCLEEPS MLIVTYEGEH NHPKLSTQSA NA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 77 | 142 | 7 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 63 | KRKCSARGDEASGGKCHCSKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.WF2VJ |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU375352 | 1e-123 | EU375352.1 Glycine max transcription factor (WRKY22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025604806.1 | 1e-110 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 5e-81 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A445CKA5 | 1e-108 | A0A445CKA5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA02G15920.1 | 1e-98 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 4e-75 | WRKY DNA-binding protein 21 |