PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.VA5ME

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 401aa MW: 42577.9 Da PI: 5.8152

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.VA5ME	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.7	1.6e-10	204	262	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l se+ Aradu.VA5ME 204 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSEN 262 9*****************************************99999888777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.3E-16	200	264	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	202	265	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.5E-10	204	259	No hit	No description
Pfam	PF00170	3.7E-9	204	262	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-11	204	255	No hit	No description
CDD	cd14703	9.37E-25	205	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MQDPPSKSNP NNPNANNNAV NAHQLPPQPP PTAAVPPSST GVTSSVFIRG DGCEGGSPNA 60 HHRRAHSEVS FRLPDDMMDL SPSDPFTGGS STASLEEIGS EDDLFSTYID VEKLSGGGGA 120 SNGSIQGGNG SDQSGYGGAG TSGNNEEDKS PGGNGSAGAG GARPRHRHSN SVDGSTTGVF 180 GEIMEAKKAM PPDKLAELWT IDPKRAKRIL ANRQSAARSK ERKARYIQEL ERKVQTLQTE 240 ATTLSAQLTL YQRDTTGLSS ENTELKLRLQ AMEQQAQLRD ALNDALMKEV ERLKIATGEA 300 MKPSESFNLG MQQMQFAGSN FFPLPQSSGP PGLQSIPMMS FCHPPSNIPH EMQQSNSHQL 360 ADILHNDQLG RLQGLDISSK GSTLVKAEGP SLSASESSNT F

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MQDPPSKSNP NNPNANNNAV NAHQLPPQPP PTAAVPPSST GVTSSVFIRG DGCEGGSPNA  60
HHRRAHSEVS FRLPDDMMDL SPSDPFTGGS STASLEEIGS EDDLFSTYID VEKLSGGGGA  120
SNGSIQGGNG SDQSGYGGAG TSGNNEEDKS PGGNGSAGAG GARPRHRHSN SVDGSTTGVF  180
GEIMEAKKAM PPDKLAELWT IDPKRAKRIL ANRQSAARSK ERKARYIQEL ERKVQTLQTE  240
ATTLSAQLTL YQRDTTGLSS ENTELKLRLQ AMEQQAQLRD ALNDALMKEV ERLKIATGEA  300
MKPSESFNLG MQQMQFAGSN FFPLPQSSGP PGLQSIPMMS FCHPPSNIPH EMQQSNSHQL  360
ADILHNDQLG RLQGLDISSK GSTLVKAEGP SLSASESSNT F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.VA5ME

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015949054.1	0.0	transcription factor RF2b
Swissprot	O22873	1e-103	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A445EVB3	0.0	A0A445EVB3_ARAHY; Uncharacterized protein
STRING	XP_004500364.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	2e-91	basic leucine-zipper 52

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]