PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.U68KB | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 24885.4 Da PI: 7.152 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.5 | 9.9e-43 | 56 | 155 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la+++ Aradu.U68KB 56 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPENQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQ 153 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Aradu.U68KB 154 AE 155 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.105 | 55 | 156 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.6E-43 | 56 | 153 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEYKLNSSSS IPIIHVPTKI SNSPPPPSSS PPPISQSQSP TSCAPPSPPP PVVVSPCAAC 60 KILRRRCVEK CVLAPYFPPT DPLKFTIAHR VFGASNIIKF LQELPENQRA DAVSSMVYEA 120 NARIRDPVYG CAGAICQLQK QVSELQAQLA KAQAELVNMH CQQTNLVALI CMEMSTSNTH 180 QSSSHQEQHH MMMIQPQNNN NNNNHVDMSC FIDDNNLASA WEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-44 | 47 | 167 | 2 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-44 | 47 | 167 | 2 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.U68KB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015942427.1 | 1e-166 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 3e-72 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A445BD21 | 1e-129 | A0A445BD21_ARAHY; Uncharacterized protein | ||||
STRING | AES62228 | 3e-94 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-54 | LOB domain-containing protein 1 |