PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.TP87H
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 548aa    MW: 58543.5 Da    PI: 6.7076
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.TP87HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR24.36.5e-081041281742
          TCR  17 YCeCfaagkkCseeCkCedCkNkeek 42 
                  YCeCfa+g +C+  C+C +C+N+ e+
  Aradu.TP87H 104 YCECFASGIYCDG-CNCVNCFNNVEN 128
                  *************.********9875 PP
2TCR512.8e-16173212140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Aradu.TP87H 173 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 212
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163431.12794213IPR005172CRC domain
SMARTSM011140.001199128IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.6E-5104125IPR005172CRC domain
SMARTSM011148.4E-20173214IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12176211IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MGEGEGEGVD GGSKTATSSV DAAVTTPVEA PTGKKLARQL DFTALPEKRS QQQLQQRLHS  60
QVQVQQQKQI VAPVIAAQPQ IMAQPSVVVK PVPSPQAPAV RVGYCECFAS GIYCDGCNCV  120
NCFNNVENEA ARREAVEATL ERNPNAFRPK IASSPHGTRD SREEAGEVLI LGKHNKGCHC  180
KKSGCLKKYC ECFQANILCS ENCKCMDCKN FEGSEERQAL FHGDQNNMTY IQQAANAAIT  240
GAIGTSGYSS PPVSKKRKGQ EIFVGQTPKE PSVSKLGQQV NHVRSPAPSP SLPSLPGTRV  300
GTATLGPSKF SYRSLLADII QPQHLKELCS VLVLLSGQAA KTLTDQKNLM EKHTEDQTET  360
SLASSNQSQL PNQKEGDVEK AMADDCSSAN QADKISPDNS SSDGADVPKG RPMSPGTLAL  420
MCDEQDTFMT AASPVGTMAH GCNTSSQFPY GQGMTEEYAE QERIVLTKFR DFLNRCSSLA  480
RSELESQKDP INNGTGNTTT ESLHQQGATS NGVAKSIVPP TAAAASASPV PGHNNVPENG  540
ENKMKTEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2810422225132Protein lin-54 homolog
5fd3_B2e-2810422225132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.TP87H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-114AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203719.10.0protein tesmin/TSO1-like CXC 5
RefseqXP_025656071.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-163TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A445D3570.0A0A445D357_ARAHY; Uncharacterized protein
STRINGGLYMA07G09380.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-131Tesmin/TSO1-like CXC domain-containing protein