PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.TN75P

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 367aa MW: 40422.4 Da PI: 6.5119

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.TN75P	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.1	3.8e-14	176	222	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Aradu.TN75P 176 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 222 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-11	176	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-15	177	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-15	177	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.75E-5	186	225	No hit	No description
Gene3D	G3DSA:3.30.70.260	9.8E-4	258	307	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MMKKEEDQGQ CSPQAIHNTI QSYQEQLFLQ QQMQHHNPNG TDLYIGSGGS GRGLVFPPEA 60 SPIMQPPWSM PPVHPFNQAG PVHPVSHHND NNNNNHDPFL VPPPPSSPYA SFFNRRVPSL 120 QFAYEGPSSE HLRIISDSLV GPMVHPGSVG PFGLQAELGK MTAQEIMEAK ALAASKSHSE 180 AERRRRERIN NHLAKLRSLL PNTTKTDKAS LLAEVIQHVK ELKRQTSLIA ETNPVPTESD 240 ELTVDTTDED GRFVIKASLC CEDRSDLLPD LIKTLKELKL RTLKAEITTL GGRMKNVLFI 300 TADEEDYSSS NAGSGGGEQS LQLGHYCISS IQEALRAVME KGGGDESASG NVKRQRTNIN 360 ILEQRSL

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MMKKEEDQGQ CSPQAIHNTI QSYQEQLFLQ QQMQHHNPNG TDLYIGSGGS GRGLVFPPEA  60
SPIMQPPWSM PPVHPFNQAG PVHPVSHHND NNNNNHDPFL VPPPPSSPYA SFFNRRVPSL  120
QFAYEGPSSE HLRIISDSLV GPMVHPGSVG PFGLQAELGK MTAQEIMEAK ALAASKSHSE  180
AERRRRERIN NHLAKLRSLL PNTTKTDKAS LLAEVIQHVK ELKRQTSLIA ETNPVPTESD  240
ELTVDTTDED GRFVIKASLC CEDRSDLLPD LIKTLKELKL RTLKAEITTL GGRMKNVLFI  300
TADEEDYSSS NAGSGGGEQS LQLGHYCISS IQEALRAVME KGGGDESASG NVKRQRTNIN  360
ILEQRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	186	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.TN75P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015967592.1	0.0	transcription factor bHLH30-like
Refseq	XP_025701803.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	1e-108	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A445D003	0.0	A0A445D003_ARAHY; Uncharacterized protein
STRING	GLYMA01G22530.4	1e-171	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	6e-90	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]