PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.TC0KD | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 380aa MW: 42175.4 Da PI: 6.6254 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 201 | 255 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Aradu.TC0KD 201 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 255 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.3 | 6.8e-41 | 201 | 291 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een++L+ke +eLr +lk Aradu.TC0KD 201 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRKLHKELQELR-ALK 291 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-18 | 174 | 258 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-18 | 188 | 258 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 197 | 257 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-16 | 199 | 261 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.95E-15 | 201 | 258 | No hit | No description |
Pfam | PF00046 | 4.5E-15 | 201 | 255 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 232 | 255 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.8E-25 | 257 | 300 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.1E-10 | 257 | 291 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MELGLSLGDS SRPFVGFMEK PRSEPSSNQL GLGFTTTTLS IGPIITTKRQ RDQQEQQLQQ 60 QEHEDKEEAK PKDDNPHLHQ LDFLPQLSLP WHPSENGRVS KGLDVNVLPL TTVAATAAAG 120 ADDEVEEGEA LSSSPNSAAS SFQTDLCIFG GGGSYSGGSG GNYYNYGGKR DHSDGEGYDH 180 QRDCSRASDE DENCGRGGGT RKKLRLSKEQ SAYLEESFKE HNTLNPKQKL ALAKQLNLRP 240 RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ETLTEENRKL HKELQELRAL KTSNPFYMQL 300 PATTLTMCPS CERVATNPSS NNSPSPTPPS NNNSNNNNII NSNNDSNSKV IGFPLGKHTF 360 HPFAHTTQPQ QHHPHQSTES |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 205 | TRKKLRL |
2 | 249 | 257 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.TC0KD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015932528.1 | 0.0 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | Q6YPD0 | 3e-87 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A445CF21 | 0.0 | A0A445CF21_ARAHY; Uncharacterized protein | ||||
STRING | XP_007149086.1 | 1e-141 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-55 | homeobox from Arabidopsis thaliana |