PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.T8B3G | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 484aa MW: 54031.9 Da PI: 9.47 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.1e-05 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Aradu.T8B3G 100 FVCEVCNKGFQREQNLQLHRRGH 122 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.0004 | 177 | 199 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Aradu.T8B3G 177 WKCHKCSKKYAVQSDWKAHSKTC 199 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.5E-6 | 99 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.49E-6 | 99 | 122 | No hit | No description |
Pfam | PF12171 | 3.0E-5 | 100 | 122 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 11.094 | 100 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0041 | 100 | 122 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 142 | 172 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.49E-6 | 172 | 197 | No hit | No description |
SMART | SM00355 | 140 | 177 | 197 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MAATSSSSTP FFQIRQENHE NLISQQQQQL LQSSSTTTSA PPPPPPPPLP QKKRRNHAAG 60 TPCKYLSHNK TLNPKFMYIL DPDAEVIALS PKTLMATNRF VCEVCNKGFQ REQNLQLHRR 120 GHNLPWKLKQ KNPNKEPKRK VYLCPEPTCV HHHPSRALGD LTGIKKHFSR KHGEKKWKCH 180 KCSKKYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT HRAFCDALAH ENASRHPPLN 240 PFGNLYPTNN NNNILSLGNR FQELQPHHQH QHQQEPLLFS TNNNNMNMFN LSFFPRSNNS 300 SGGGSSVITD HHHQIGSAFS SSSSSIFGNN NSSLQQQQQQ ENNNNNNDNN MCSPHMSATA 360 LLQKAAQMGS TTSTTNNSNH SASSLLRAMA NNNNNHHHHL NADVDNDEHN DNLRGLMNSL 420 ANENISSSIF GNVKENGNNH NNNNLAGVCF GGSDDKLTLD FLGVGGVIRN ITGISTTSFD 480 PTMQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-32 | 173 | 233 | 3 | 63 | Zinc finger protein JACKDAW |
5b3h_F | 3e-32 | 173 | 233 | 3 | 63 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.T8B3G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC115687 | 1e-46 | AC115687.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence. | |||
GenBank | AC116426 | 1e-46 | AC116426.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 1e-46 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-46 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015946932.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_020988184.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A0L9UTT2 | 1e-156 | A0A0L9UTT2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153117.1 | 1e-147 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-88 | indeterminate(ID)-domain 2 |